Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01385 ATGATATCATATCATAGATCTATATTCAAGATGGCTCTTCTTGATGCCCTCTACTGCTCTGAAGAACATTGGGAGGAACATGTAGGCGAAGATGAATTTGAGTTATGTAGTGATTCCTTAAGCGCTAATACTAGTAGTACCATAATAAATTCCCCTCCTTGGTTACTAGAAACGGACATGTTCTGGGACGATGAAGAGCTAACATCACTGTTAGCTAAAGAACAACACAACCCACTTTTCCCCTGTCTCCAAAACAACCCTGTTTTGGAGAGTGCTCGTAGAGAAGCAGTGGAGTGGATGATGAAAGTGAATGCACACTACTCCTTCTCTGCTCTCACTGCTGTTCTTGCTGTTGATTACTTAGACAGGTTCCTTTTCAGCTTCCGTTTTCAGAATGGGAAGCCATGGATGACTCAGCTTGCTGCTGTTGCTTGTCTCTCCCTTGCTGCCAAAGTGGAGGAGACTCAAGTTCCCCTTTTACTAGACCTTCAAGTGGAGGACAGTAGATACTTGTTTGAAGCTAAGACTATTAAAAGGATGGAGATTTTGGTACTTTCAACTCTTGGATGGAAGATGAATCCAGCAACATCTCTCTCTTTTGTTGATTATATCATAAGAAGACTTGGATTGAAGGATCATCTCTGCCGGGAGTACCTAAGGAGATGTGAGGGTGTTCTTCTCTCTGTCATTGGAGCAGATTCTAGATTTATGAGTTATCTGCCTTCTGTGTTGGCAACTGCTACAATGATGCATGTTGTCAACAGCGTGGAGCCTCATCTAGGAGTCGAATACCAAAGCCAGCTACTTGGTATTCTTGGAATCAACAAGGAAAAGGTGGATGAATGTTGCAAGGTTATGTTGGAAGTGTGGTCAGGGTATGAGCAGGGGAAGCAATGCATCAAACGCAAGTTTGGGTCCATTCCTGGTAGCCCAAATGGCGTAATGGATGTGTCTTTTAGCTGTGATAGCTCCAATGACTCTTGGGCTGTAGCTGCTGCTTCTGTGTCATCCTCACCAGAGCCTTTGTCCAAGAAAACTAGGAGCTTCAACTAA 1053 0.4368 MISYHRSIFKMALLDALYCSEEHWEEHVGEDEFELCSDSLSANTSSTIINSPPWLLETDMFWDDEELTSLLAKEQHNPLFPCLQNNPVLESARREAVEWMMKVNAHYSFSALTAVLAVDYLDRFLFSFRFQNGKPWMTQLAAVACLSLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKRMEILVLSTLGWKMNPATSLSFVDYIIRRLGLKDHLCREYLRRCEGVLLSVIGADSRFMSYLPSVLATATMMHVVNSVEPHLGVEYQSQLLGILGINKEKVDECCKVMLEVWSGYEQGKQCIKRKFGSIPGSPNGVMDVSFSCDSSNDSWAVAAASVSSSPEPLSKKTRSFN. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01385 350 Pfam Cyclin, N-terminal domain 83 193 IPR006671 -
Seca3g01385 350 SMART cyclin_7 98 186 IPR013763 -
Seca3g01385 350 CDD CYCLIN_AtCycD-like_rpt2 196 286 - -
Seca3g01385 350 Gene3D - 78 193 - -
Seca3g01385 350 SUPERFAMILY Cyclin-like 61 193 IPR036915 -
Seca3g01385 350 SUPERFAMILY Cyclin-like 179 299 IPR036915 -
Seca3g01385 350 SMART Cyclin_C_2 195 323 IPR004367 -
Seca3g01385 350 Gene3D - 194 284 - -
Seca3g01385 350 ProSitePatterns Cyclins signature. 93 124 IPR006671 -
Seca3g01385 350 FunFam CYCLIN D32 194 284 - -
Seca3g01385 350 PANTHER CYCLINS 70 294 IPR039361 -
Seca3g01385 350 Pfam Cyclin, C-terminal domain 196 320 IPR004367 -
Seca3g01385 350 CDD CYCLIN_AtCycD-like_rpt1 92 190 - -
Seca3g01385 350 FunFam D3-type cyclin 86 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01385 Seca-Chr3 23783881 23785827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01385 13 289 Core Cell Cycle Gene Families AT4G34160 53.430 2.17e-95 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01385 K14505 - gmx:100811122 454.907