Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01378 ATGGCTTCGGCAAAAAGAGAGATGGATCGCATTAAAGGGCCATGGAGCCCCGAAGAAGACGAAGCGTTACGGAGGCTGGTTCAGACTCACGGGCCTAGAAACTGGTCATTGATAAGCAAATCCATTCCGGGTCGATCCGGGAAGTCATGCCGGTTGCAGTGGTGTAACCAACTGTCTCCGGAGGTGGAGCACAGGTCTTTCACTTCAGAGGAAGACGAGACCATTATCAAAGCCCATGCTAAGTTTGGCAACAAATGGGCTACAATTGCTCGTTTGCTTAATGGCCGCACCGACAACGCTATAAAAAATCACTGGAATTCCACTCTCAAGAGAAAATGCTCCGCCATCTCCGATACTCTCACCGACCACCACCACCAACAGCCTCACAAAAGATCGGCCAGTGTTGGTGCGGACACCGTCTCGGGTTTCTACTTGACTCCGAGCAGCCCATCCAGATCTGATTTGAGCGATTCTAGTTTACCTATTGTGTCTTCAACTCCGTCTCTGTTTCCAAGGAGCGCAACCGTCGTGGAAACTGCGTCTTCTTCTGCCACTGATCCACCCACGTCACTCTGCTTATCTTTGCCCGGATCCTATTCCTGTGATGTCTCTAACAAAGGATCTGGCACGAATCGGGTATCCGGTTGCAGTGATCAATTTGGTTGCGAGAAACAGTTATTTAGCGCAGAGTTTTTGGCCGTGATGCAAGAGATGGTACGAATGGAAGTGAGGAATTACATGTCTGGGATAGAGCATAAAGGTCTGTGTATGCAGACCCAAGCCATTAGAAACGCTATGATGAAGCGTATGGGAATTGGCAGGGTTGAGTAG 831 0.4958 MASAKREMDRIKGPWSPEEDEALRRLVQTHGPRNWSLISKSIPGRSGKSCRLQWCNQLSPEVEHRSFTSEEDETIIKAHAKFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSAISDTLTDHHHQQPHKRSASVGADTVSGFYLTPSSPSRSDLSDSSLPIVSSTPSLFPRSATVVETASSSATDPPTSLCLSLPGSYSCDVSNKGSGTNRVSGCSDQFGCEKQLFSAEFLAVMQEMVRMEVRNYMSGIEHKGLCMQTQAIRNAMMKRMGIGRVE. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01378 276 FunFam MYB transcription factor 12 63 - -
Seca3g01378 276 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Seca3g01378 276 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Seca3g01378 276 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Seca3g01378 276 CDD SANT 14 56 IPR001005 -
Seca3g01378 276 Gene3D - 11 63 - -
Seca3g01378 276 FunFam Transcription factor MYB44 66 112 - -
Seca3g01378 276 SMART sant 63 111 IPR001005 -
Seca3g01378 276 SMART sant 11 60 IPR001005 -
Seca3g01378 276 CDD SANT 66 109 IPR001005 -
Seca3g01378 276 PANTHER MYB PROTEIN-RELATED 12 141 - -
Seca3g01378 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Seca3g01378 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 58 IPR017930 -
Seca3g01378 276 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Seca3g01378 276 Gene3D - 65 136 - -
Seca3g01378 276 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01378 Seca-Chr3 23620686 23621516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01378 5 276 MYB Transcription Factor Family AT4G37260 46.933 7.79e-93 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g01378 Myb_DNA-binding 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01378 K09422 - cpap:110818856 373.244