Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01362 ATGATCTCAATCTCTTCCGCAGAATTGAACTACTTAGTTTTCCGTTACCTTCACGAATCAGGTTTTACTCATTCTGCATTTGCATTTGGGTATGAAGCAGGAATTGATAAAAGTGGAATTGATGTTAATGTGGTTCCACCAGGTGCTCTTGTTACTTTCATACAGAAAGGAATTCAATACCTTGAGCTGGAAGCAAACTTGAGTGGTAATGATGCAGACATGGATGAGGATTTCTCATTGCTACAGCCTCTTGATCTTATTACAAAGGATCCATATGAACTACTCAATATAGTCATAGCCAAAAAGGAAAATCTACGTCAACATAAGTTCAAATCAAATAAAATAGTGAATGACTTGAGTCAGGACAATGCCAGGGAACCTGTTCAAGAAACAGAGGAGAAAGAGAGGAAAGAAAAGGAAAATGAACACAGATCAGAAAAAATAAGTTTAGAGAAAGAAAAGGGTGAATACAAAGATATACAACATCCAGATAAAAACCATATACAGAATCATGAAGATAAGATTGTTGTTGAAAATCTAGAAAATGGAGCACATGGAGGGCCCGAGCCGATGGAGATCTCTGGAAGCTCCATGTCCCTGCCCAATGATACTCCATCAGGCGACGTGAAAATTCTGGAAGGCCATACCTCGGAGGTTTTTGCTTGTGCATGGAATCCATCAGCTCCACTTCTTGCATCTGGATCTGGGGATTCAACTGCTCGAATTTGGAAAATTGCTGATGGAACTTGTGACTCTAATATGCAAAATGAATCAGTAAATGTTGTGGTACTGAAACACTTTACAGGAAGCACCAATGAAATAAGCAGGGATGTGACAACACTTGACTGGAGTGGGGACGGAACATTGTTGGCAACTGGTTCCTATGATGGGCAAGCAAGAATATGGAGTAGAGATGGAGAGTTGAATAGTACACTAAGCAAGCACAAAGGTCCAATCTTTTCTCTAAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGAAGTGTAGATAAAACTGCTATAGTTTGGGACATGAAGACTGGGGAATGGAAACAACAATTTGAATTTCACTCTGCCCCAACTCTTGATGTTGACTGGCGAAACAATGTTTCATTTGCAACATGCTCCACTGATAAAATGATATATGTCTGCAAAGTTGGAGACAATAGACCAATCAAATGTTTCTCAGGGCATCAGGATGAAGTTAATGCCATTAAATGGGATCCTACGGGTTCATTGCTGGCTTCCTGCTCCGATGATCACACTGCAAAAATATGGAGTTTGAAGCAGGACACATGTTTACATGATTTAAAGGAACATGTCAAGGAGATATATACAATTCGATGGAGCCCTACAGGACCCGGTACCAACAGCCCCAATCAGCAGTTACTGCTAGCAAGGTAA 1404 0.4038 MISISSAELNYLVFRYLHESGFTHSAFAFGYEAGIDKSGIDVNVVPPGALVTFIQKGIQYLELEANLSGNDADMDEDFSLLQPLDLITKDPYELLNIVIAKKENLRQHKFKSNKIVNDLSQDNAREPVQETEEKERKEKENEHRSEKISLEKEKGEYKDIQHPDKNHIQNHEDKIVVENLENGAHGGPEPMEISGSSMSLPNDTPSGDVKILEGHTSEVFACAWNPSAPLLASGSGDSTARIWKIADGTCDSNMQNESVNVVVLKHFTGSTNEISRDVTTLDWSGDGTLLATGSYDGQARIWSRDGELNSTLSKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWDMKTGEWKQQFEFHSAPTLDVDWRNNVSFATCSTDKMIYVCKVGDNRPIKCFSGHQDEVNAIKWDPTGSLLASCSDDHTAKIWSLKQDTCLHDLKEHVKEIYTIRWSPTGPGTNSPNQQLLLAR. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01362 467 Gene3D - 201 467 IPR015943 GO:0005515
Seca3g01362 467 Gene3D - 2 90 - -
Seca3g01362 467 Pfam LisH 8 33 IPR006594 GO:0005515
Seca3g01362 467 CDD WD40 209 453 - -
Seca3g01362 467 FunFam WD40 repeat-containing protein HOS15 201 467 - -
Seca3g01362 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Seca3g01362 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 303 IPR001680 GO:0005515
Seca3g01362 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 349 - -
Seca3g01362 467 SMART WD40_4 205 244 IPR001680 GO:0005515
Seca3g01362 467 SMART WD40_4 430 467 IPR001680 GO:0005515
Seca3g01362 467 SMART WD40_4 388 427 IPR001680 GO:0005515
Seca3g01362 467 SMART WD40_4 305 344 IPR001680 GO:0005515
Seca3g01362 467 SMART WD40_4 260 303 IPR001680 GO:0005515
Seca3g01362 467 SMART WD40_4 347 385 IPR001680 GO:0005515
Seca3g01362 467 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Seca3g01362 467 MobiDBLite consensus disorder prediction 125 156 - -
Seca3g01362 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 212 245 - -
Seca3g01362 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 353 IPR001680 GO:0005515
Seca3g01362 467 MobiDBLite consensus disorder prediction 116 156 - -
Seca3g01362 467 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Seca3g01362 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 436 IPR001680 GO:0005515
Seca3g01362 467 Pfam WD domain, G-beta repeat 307 344 IPR001680 GO:0005515
Seca3g01362 467 Pfam WD domain, G-beta repeat 264 303 IPR001680 GO:0005515
Seca3g01362 467 Pfam WD domain, G-beta repeat 390 427 IPR001680 GO:0005515
Seca3g01362 467 Pfam WD domain, G-beta repeat 209 244 IPR001680 GO:0005515
Seca3g01362 467 FunFam F-box-like/WD repeat-containing protein TBL1XR1 2 93 - -
Seca3g01362 467 PANTHER WD40 REPEAT PROTEIN 4 466 IPR045183 GO:0003714|GO:0016575
Seca3g01362 467 SMART Lish 5 37 IPR006594 GO:0005515
Seca3g01362 467 SUPERFAMILY WD40 repeat-like 200 453 IPR036322 GO:0005515
Seca3g01362 467 PRINTS G protein beta WD-40 repeat signature 231 245 IPR020472 -
Seca3g01362 467 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Seca3g01362 467 PRINTS G protein beta WD-40 repeat signature 414 428 IPR020472 -
Seca3g01362 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 429 - -
Seca3g01362 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 253 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01362 Seca-Chr3 23363932 23369282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01362 230 453 U-box Gene Family AT2G33340 23.830 4.34e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01362 K04508 - gmx:100783690 786.949