Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01358 ATGGGGAGAGTGAAGCTTCAGATAAAAAAGATTGAGAATGTAACAAATAGGCAAGTCACTTTCTCAAAGAGGAGGAATGGACTAATCAAGAAAGCTTATGAAATTTCTGTTCTCTGTGATGTTGATGTTGCTCTCATCATGTTTTCTCCATCTGGGAGAGCTTGTCTCTTCTCTGGCAAACGAAGCATTGAAGAAATTCTAGAACGATATATAAATCTTCCTGAGAATGAACGAGGAAGGATGCATAATGAAGAGCACATTCAAAAGGCCATTGGTAAGTTGAAAGCTGAAGCCGATCAAATATACCAAGCTCCTAGCCCCATGATTACAGATTCTCAAGTTGAGGAGATTCAAAGAGAAATTTTTATTTGCAAGTCTCAATTGGAAGAGATGGAGAAGCGACTAAGGATATTTGAAGGTGATCCTTCTGAGATCACAACACTGTGTGAGGCTGAATATCGTGAGCAAGTCCTTCAGGAAACTCTCAAACAAGTGCAACTGCAAAAATGTCTTTTGGAGGAAGGGCCTAATTCTCGTCCATCTCCGCAGGTACACCTTGCAAAAACTGTTGATGTAGATGGATTTGTTACCAGAACCTCAAAGGAAGCAGTAGACTGGTTTCCCCAGGCAGATCCACATGTTCCAATTCTCAACTTTGCTAATGCTTATGACCCTGCTCCTCTCAGTGATGTGATTGGTATGGTAACGCCAAATTCGACCCTTGTGCACTCTACAAACATGGATCAGCATGGTCAAATGAGTCCCAAGGATAGTGTAGAGGCTAGCATTAATATGAATAATACACTAGGTCCTCAGTTTGGACAAGTTATCGACATCAATTCATCCTCTTGGGAGCACCCTCATCATTTAGAGAGTGGATCATTGTCGGTTGCAGAGACAAGGGAAGGACAACTACTTGAACAATATTTTTCTCAATTCACCCCCTCAAATATCTTAATACCCAATCACAATCATCATACATGA 984 0.4096 MGRVKLQIKKIENVTNRQVTFSKRRNGLIKKAYEISVLCDVDVALIMFSPSGRACLFSGKRSIEEILERYINLPENERGRMHNEEHIQKAIGKLKAEADQIYQAPSPMITDSQVEEIQREIFICKSQLEEMEKRLRIFEGDPSEITTLCEAEYREQVLQETLKQVQLQKCLLEEGPNSRPSPQVHLAKTVDVDGFVTRTSKEAVDWFPQADPHVPILNFANAYDPAPLSDVIGMVTPNSTLVHSTNMDQHGQMSPKDSVEASINMNNTLGPQFGQVIDINSSSWEHPHHLESGSLSVAETREGQLLEQYFSQFTPSNILIPNHNHHT. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01358 327 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Seca3g01358 327 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca3g01358 327 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca3g01358 327 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca3g01358 327 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca3g01358 327 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Seca3g01358 327 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Seca3g01358 327 Coils Coil 114 134 - -
Seca3g01358 327 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 188 - -
Seca3g01358 327 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Seca3g01358 327 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca3g01358 327 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01358 Seca-Chr3 23278397 23280915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01358 1 165 Type I MADS-box Gene Family AT1G77980 49.718 8.19e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca3g01358 SRF-TF 3.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01358 - - cam:101506754 450.669