Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01340 ATGGCTCTGGAAGCTCTGAAATCACCCACCACCGCTACCCCATCCTTCAGTCCCTTCGAGGAACCCAATCTCAGCTACCTAGACACACCATGGGCGAAGCGAAAACGTTCAAAGCGTCCCCGCACTGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCGGCAGCAGCGGTGGTGAAACCGTCTCTACCGTCAAGCCTGCTTTATCTGATAATGAGTCGGCGCCGCTAACTAACACCGCCAAGCTCAGTTATAAATGCTCTGTATGCAACAAAGCCTTCTCTTCTTACCAAGCACTTGGTGGACACAAGGCCAGTCACCGGAAATTCGCCGGCGCTGTTGCTGCTGCTGAGGATCAGTCTACTTCCTCTGCCGTGACAACCAGCTCCGCATCCAACGGTGGAGGCAAGGTCCATCAGTGTTCAATTTGCCACAAGTCGTTCCCAACAGGGCAAGCCTTGGGAGGACACAAGCGTTGCCACTATGAAGGCGGTGGTGGCGGTAGCAGCGCCGTAACTGCCTCGGAAGGAGTTGGGTCCACTCACAGTCACCACCGCGACTTCGATCTCAACCTCCCGGCTTTTCCGGACTTCTCAACTAAGTTCTTCGTGGACGACGAGGTCTCCAGCCCTCTTCCTAAGAGGCCCTGTCTTTTGGCCATACCGAAGATTGAAATCCCTCAACACTAA 699 0.5508 MALEALKSPTTATPSFSPFEEPNLSYLDTPWAKRKRSKRPRTEEEYLALCLIMLARGGSSGGETVSTVKPALSDNESAPLTNTAKLSYKCSVCNKAFSSYQALGGHKASHRKFAGAVAAAEDQSTSSAVTTSSASNGGGKVHQCSICHKSFPTGQALGGHKRCHYEGGGGGSSAVTASEGVGSTHSHHRDFDLNLPAFPDFSTKFFVDDEVSSPLPKRPCLLAIPKIEIPQH. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01340 232 SMART c2h2final6 142 164 IPR013087 -
Seca3g01340 232 SMART c2h2final6 88 110 IPR013087 -
Seca3g01340 232 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 197 IPR044653 GO:0003700
Seca3g01340 232 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Seca3g01340 232 Gene3D Classic Zinc Finger 85 164 - -
Seca3g01340 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 164 IPR013087 -
Seca3g01340 232 Pfam C2H2-type zinc finger 141 165 - -
Seca3g01340 232 Pfam C2H2-type zinc finger 88 112 - -
Seca3g01340 232 SUPERFAMILY beta-beta-alpha zinc fingers 88 164 IPR036236 -
Seca3g01340 232 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Seca3g01340 232 MobiDBLite consensus disorder prediction 8 22 - -
Seca3g01340 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Seca3g01340 232 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01340 Seca-Chr3 23041206 23041904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01340 1 230 C2H2 Transcription Factor Family AT1G27730 49.590 2.64e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g01340 zf-C2H2_6 6.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01340 - - gmx:100776038 325.479