Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01338 ATGGAAACCCTTGGAGCCTTCCCTGATGGAGAATGGGAATGCTTTAGCAGAATGTTTGCAATTGAAGACCATGATGAGTCACCACAACTACTTCATCAAAGCTCCCTTCTGCTTGGTGAAGATGATGGCAACATTGGAATACAATCCATGTTTTGCTCTATCCCTGAAGCTGGGGGAAATAAGAGTATGTTTTACTCTATTGATTCTCACTACTCTAATTTGCAGTATATATCTCAAGAAAATAGTCACATTAGCAATTGTAGTGGCCATAATGTCTTCATGCCCAATCAGGGTCTCACAAACTACTATTTCAATTATCCTGATCATGTGCTGCTAGCAAATGATCCCTGCACATCCATTGGTTTTTGCATGATGGATGAGAAAAAGCCAGAGTCTTTTGTAATGGAAGAGAATGTTAGCTTGAATGAAAATGAGAAAAGTGACAGATTATCAGAAATTTCTGATCACAGTCAAGTAGAACCTATTGTTTTCCCAGCCAATAAGTTAAAGCTCAAAAGGATGCTTGATGTGCCAGAATTGGAAGTGCATGTAGTAGAAGATAAAATAAACTCATGTGGGAATCGTAAGAAAAAGGCTCGTGCTTCAAAAGATGTGCAAAGATGCATGAAGAACGCACAGTCCAAAAAGAACCAAAAGGATGACAGAGATGGGAATGAGGCAGAAGAAACCAATGCAGGTTCAGATGGACATAGCTCTAGTAGTTATATCTCAGAGGAGCATAATACTTCTCAGGAAAATAATGGAGGTGTGGCTCTCAATTTAAATGGGAAAACAAGAGCCAGCAGGGGATCAGCAACAGATCCTCAGAGCCTCTATGCAAGGAAGAGAAGGGAGAGAATAAATGAGAGACTAAGAATTCTACAGAATCTTGTACCCAACGGAACAAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTCCATTACGTGAAATTTTTGCAGCTTCAGATCAAGCTTCTAAGCTCTGATGATTTGTGGATGTATGCTCCGATTGCTTATAATGGACTTGACATTGGACTCAACCGCAGCGGGAAGATTTCTCCACCTTGA 1071 0.4034 METLGAFPDGEWECFSRMFAIEDHDESPQLLHQSSLLLGEDDGNIGIQSMFCSIPEAGGNKSMFYSIDSHYSNLQYISQENSHISNCSGHNVFMPNQGLTNYYFNYPDHVLLANDPCTSIGFCMMDEKKPESFVMEENVSLNENEKSDRLSEISDHSQVEPIVFPANKLKLKRMLDVPELEVHVVEDKINSCGNRKKKARASKDVQRCMKNAQSKKNQKDDRDGNEAEETNAGSDGHSSSSYISEEHNTSQENNGGVALNLNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGLNRSGKISPP. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01338 356 MobiDBLite consensus disorder prediction 191 283 - -
Seca3g01338 356 Gene3D - 273 329 IPR036638 GO:0046983
Seca3g01338 356 MobiDBLite consensus disorder prediction 231 275 - -
Seca3g01338 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 271 336 IPR036638 GO:0046983
Seca3g01338 356 Pfam Helix-loop-helix DNA-binding domain 281 321 IPR011598 GO:0046983
Seca3g01338 356 MobiDBLite consensus disorder prediction 209 230 - -
Seca3g01338 356 FunFam Basic helix-loop-helix transcription factor 272 329 - -
Seca3g01338 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Seca3g01338 356 CDD bHLH_AtIND_like 272 334 - -
Seca3g01338 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 97 343 - -
Seca3g01338 356 SMART finulus 277 326 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01338 Seca-Chr3 22971940 22973666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01338 61 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 40.252 1.71e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g01338 HLH 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01338 - - gmx:100797500 379.793