Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01323 ATGGCTCCCAGAGTGCCTCCTACGATCGACATTGAACCTGAACACTGCCCTGAAGCAGTGATTGAGTGGTACAGAATCTCTGGCTTAGAAGATCGCAGAGAAAGTGCAAGAAGAAAGGATGTTGCTCTCAAAGCAAAGCAGCACCTTCTTTTTCTGGGTTGGAATTTTTGGTACATTGACAAGAAAGGTAGGTGGGAACTTCGTTACACATCACCCTCCACTGGCAAGAACTACATTTCTCTAAGAACTGCTTGCGAGAGCTGCATTCAAGAAGGAGGGTGCGACCCTGTCAATAATGGTACCCCAGAATCAGAAGGGTACCCTGAACTTGAAGGACACTCTGATACCCCCAAGGTTGAGGAACACACTTCTACTTCAAATTCAGAGATTTTCCCTTCTGCACAACCAAGTCAAGGAGAGAAAAGATCAATTTCCTCTTCTGAACAAACAGAATCAGAGAATCAACCAAGAAAATGCAGGGTGCAGCCAAAAAGAGGCAAGAAAAAAGAACGAAAATCATCATCGGAAGAGGAGTTGACTTCGGTGATTAACACTGAATCTGAAGTTACAAGGCCAAAGCAAGGTGATGAGGTGCAAAGTCCTTATTTTTTAAAGCGCAATCCTCGAACAATAGTTTCTTGGTTGATTGACAACGAAGTGGTTCTTCTAGATTCAAAAGTTTTCTGCAGAGGTACCAACAATGTGGTAAAAAATGGGAGGCTATTACGTAGTGGAATAGCTTGTGATTGTTGTGGTACCATTTTCACTTTGACTCGTTTTGAGGCTCATGCTAGTTGTACAAGGCATAGACCTTCCACAAGTATCTTCTTGGAAAATGGAACGTCTTTGTTACAATGCCAAATGGATGCTCTTGGTTTTCTTGACAATATGCAAAGAGATAATTTTCAAGACAGAAACGAGAGCTTTTGTTCCATTTGTCGTTATGGTGGTGAACTTGTGCTCTGTGATCGTTGCCCTTCTTCATTTCATCTCAGTTGTTTAGGTCTTGATCATGTCCCTGATGGTGATTGGTTCTGCCCACCATGTTGTTGCAGAATATGCAGCAGACCCCGATGCAGAGAAGATTCTGAGCATGACGTGGATAATAACATACTCTCTTGTTGTCAATGTGAGCGCAAATTTCACATTGGTTGCCTCAAGAGTAATAACATACATTGGTTGCCTCAAGGGTTTTCTGACATGGAAGATCTTCCTAATCCTAACAACAAATGGTTTTGCAATAAGGAGTGTGAGAACATATTTTGTACTCTGCAGAAGTTGATGGGGAACCCAATTCGTGTGGCCGCTGATACTCTGGATTGGACTTTGTTGAAGACATTAAGAAGTGATGATAACTCTGGAGGAGATCTTTCACCTGATGGACTTGAAAGGCTGAGTCAAATTGAAAGCAAGTTGAGTGTGGCTCTTGGTGTGATGCTAGAGTGTTTTACTCCAGCTATTGATGTTTTCTCTGGCAGGGATATTTTGAGGGATGTTATTTTCAGCAGGGGTTCTGAATTTATTCGTCCTAACTGTGGTGGATTCTACACTGTGATTCTGGAGATGAATGATGAAGTGATTTCTGTTGCTACTGTAAGGATTCATGGGCAGAAGGTTGCAGAATTACCCTTTGTGGCTACTAGTGAACAGTATAGAAAGCTTGGACTGTGTCGCATCTTGATGAATGAGCTTGAGAAGCATTTGATTCAATTAGGAGTAGAGAGTATGGTTTTGCCCTCCTCTCATAATGCAGTAGACACATGGACTAACTCATTTGGCTTTGCAAGGATGACCGATTCAGATAAGTCTCAGTTTCTTGAGTACAGTTTTCTAGAATTTCAGGACACCACCTGGTGCCACAAACCATTATTGGTAAATCCTTCAATGAATTACATGGCATAA 1902 0.4196 MAPRVPPTIDIEPEHCPEAVIEWYRISGLEDRRESARRKDVALKAKQHLLFLGWNFWYIDKKGRWELRYTSPSTGKNYISLRTACESCIQEGGCDPVNNGTPESEGYPELEGHSDTPKVEEHTSTSNSEIFPSAQPSQGEKRSISSSEQTESENQPRKCRVQPKRGKKKERKSSSEEELTSVINTESEVTRPKQGDEVQSPYFLKRNPRTIVSWLIDNEVVLLDSKVFCRGTNNVVKNGRLLRSGIACDCCGTIFTLTRFEAHASCTRHRPSTSIFLENGTSLLQCQMDALGFLDNMQRDNFQDRNESFCSICRYGGELVLCDRCPSSFHLSCLGLDHVPDGDWFCPPCCCRICSRPRCREDSEHDVDNNILSCCQCERKFHIGCLKSNNIHWLPQGFSDMEDLPNPNNKWFCNKECENIFCTLQKLMGNPIRVAADTLDWTLLKTLRSDDNSGGDLSPDGLERLSQIESKLSVALGVMLECFTPAIDVFSGRDILRDVIFSRGSEFIRPNCGGFYTVILEMNDEVISVATVRIHGQKVAELPFVATSEQYRKLGLCRILMNELEKHLIQLGVESMVLPSSHNAVDTWTNSFGFARMTDSDKSQFLEYSFLEFQDTTWCHKPLLVNPSMNYMA. 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01323 633 Gene3D - 502 608 - -
Seca3g01323 633 Pfam Acetyltransferase (GNAT) family 506 594 IPR000182 GO:0016747
Seca3g01323 633 SMART PHD_3 351 417 IPR001965 -
Seca3g01323 633 SMART PHD_3 309 350 IPR001965 -
Seca3g01323 633 SUPERFAMILY FYVE/PHD zinc finger 296 360 IPR011011 -
Seca3g01323 633 PANTHER PHD FINGER PROTEIN 12 17 628 IPR042163 GO:0003714|GO:0045892
Seca3g01323 633 MobiDBLite consensus disorder prediction 123 152 - -
Seca3g01323 633 Pfam Tify domain binding domain 239 289 IPR032308 -
Seca3g01323 633 Pfam PHD-finger 309 351 IPR019787 -
Seca3g01323 633 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 504 599 IPR016181 -
Seca3g01323 633 MobiDBLite consensus disorder prediction 96 194 - -
Seca3g01323 633 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 370 IPR013083 -
Seca3g01323 633 CDD NAT_SF 518 578 - -
Seca3g01323 633 ProSiteProfiles Zinc finger PHD-type profile. 307 352 IPR019787 -
Seca3g01323 633 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 478 624 IPR000182 GO:0016747
Seca3g01323 633 MobiDBLite consensus disorder prediction 108 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01323 Seca-Chr3 22792366 22794267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01323 41 566 PHD Transcription Factor Family AT5G58610 35.763 2.76e-103 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g01323 Acetyltransf_1 5.1e-09 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01323 - - aprc:113866262 610.912