Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01320 ATGTTGTGCGCTTGCTCCGGTGAGCAATTCAAGTTTGAAGAACCGCCACAGTCGCCGGAATCCCTCGCAACAAGGGATTTCTCTGCCAGTGGACTTTCTTCAAGGACTGCGGATTGGGAATCCAAATTTGATGAAACTCAAGTAGAAGAAGTTGAATCTACTCTTAAAGAAGCTCTTTCCTTAAACTATGAGGAAGCTAGGGCTTTGCTGGGGAGACTTGAATACCAAAGAGGCAACTTTGAAGCTGCCCTTCAAGTATTTCAAGGTATAGACATCGAGGGTTTGACCCCAAGGATGATCAAGGCAATTGCTGAAAGAACTAAGCAAAGAAAACCACGGTCCAAGGCTGACATGGTCATTCTCCCAAATGTCATGTCACTGCATTCAGTAAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCATTATCCTTAGAGGAACTTGGAAGATACATTGATGCTGCAAAGGAGTGCAGAATAATTCTGGATATGGTTGAATCTGCCCTTCCTAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAAATGTTCCACAGAGCATTGGAGTTGCTTCCAAGCTTGTGGATCAGGGCAGGCTTTCTAGATGAAGCTGTCACTGCATATCGTCGTGCTCTGGTCAAGCCATGGAATTTGGAGCAACGAAGGTTGGCTGGTGTGCAAAAAGATTTAGCCACAACTCTACTCTATGGTGGTGTTGAAGTAAGCCTACCCTCTCACTTGCAAGTGTGGGGTCACATAACAGTGATAACACCCAAGAGTAACATTGAAGAAGCTATACTTTTGCTATTAATACTAATGAGCAAGGTGGCAACTCGGGAGCTAGACTGGGATGGTGAAATAATGGATCATCTTACATTTGCACTTTCAGTTACTGGGATGTTTGAGACATTGGCAGATCATGTAGAGCAGATCCTTCCAGGCATCTATAATCGAGCTGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACATAATGAAGCAGCATTGAACCTTTTGAGGAAGGCATGTGGTAGTTCTGAGGCCAAGCACATACCCCATTTTCAATCATTTTTGTTTGGAGCAAAACTTTGTTCTCAGGATCCTCGCTATGCTCATGAAGGCATTAACTTTTCACGTGAAGTTATTGATTTAGCTAAGCACCAAAATGAGCATTTTTTGGGTCAAGGCCGCAAATTTCTTGGTGTTTGCTATGGAGCTGCAGCTAGACTTTCTGTATTGGATCATGAAAGAAGTATATTTCAAAAAGAGGCTTTGAATTTTCTAAACTGTGCTGCTGTAAGTGAGAATGGTGACCCAGAAGTGATGTTCAGTCTTGGACTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTATGACAATATAATGATGTGCCCAGACATGATAGTTGGCAGTTCAAGAAGAGGTTGGCAGCTTTTAGCACTCATTGTATCAGCACAACAGCGGTTTAAGGATGCTGAAACTATAGTTGATTTCGCTTTAGATGAGGCTGGGGGGATGGATCAGTTAGAACTTTTAAGATTGAAAGCAGTACTTCAAATTGCTCAGCAGCAACCCAAGCAAGCAATTGAGAGCTACAGAATCTTGCTAGCACTAATTCAAGCAAAAAAGGAGCTATTGCTTCAAAATAAGAACTTTGATCAAGCAAAAACATTCAGGAAAGAGGTATTAACGGAAAGGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATGCTGATGTTGGTTCCTTATTTGATGCAAAAGCTTGTGTTGACAAAGCCCAATTGATAGAATTTTTTTCTCCAAGAAGTTGGCATATTACAGGTAAGGAACTTGCTTACTCAGGTTTTTATTGTTGA 1884 0.4204 MLCACSGEQFKFEEPPQSPESLATRDFSASGLSSRTADWESKFDETQVEEVESTLKEALSLNYEEARALLGRLEYQRGNFEAALQVFQGIDIEGLTPRMIKAIAERTKQRKPRSKADMVILPNVMSLHSVSLLLEAILLKALSLEELGRYIDAAKECRIILDMVESALPNGMPEGIGEDCKLQEMFHRALELLPSLWIRAGFLDEAVTAYRRALVKPWNLEQRRLAGVQKDLATTLLYGGVEVSLPSHLQVWGHITVITPKSNIEEAILLLLILMSKVATRELDWDGEIMDHLTFALSVTGMFETLADHVEQILPGIYNRAERWYFLALCYSAAGHNEAALNLLRKACGSSEAKHIPHFQSFLFGAKLCSQDPRYAHEGINFSREVIDLAKHQNEHFLGQGRKFLGVCYGAAARLSVLDHERSIFQKEALNFLNCAAVSENGDPEVMFSLGLENAIQRNLDAAYDNIMMCPDMIVGSSRRGWQLLALIVSAQQRFKDAETIVDFALDEAGGMDQLELLRLKAVLQIAQQQPKQAIESYRILLALIQAKKELLLQNKNFDQAKTFRKEVLTERKLEMEAWQDLATIYADVGSLFDAKACVDKAQLIEFFSPRSWHITGKELAYSGFYC. 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01320 627 Gene3D Tetratricopeptide repeat domain 38 254 IPR011990 GO:0005515
Seca3g01320 627 PANTHER PROTEIN NPG1 1 618 IPR043376 -
Seca3g01320 627 SUPERFAMILY TPR-like 320 603 IPR011990 GO:0005515
Seca3g01320 627 SUPERFAMILY TPR-like 197 348 IPR011990 GO:0005515
Seca3g01320 627 Gene3D Tetratricopeptide repeat domain 261 606 IPR011990 GO:0005515
Seca3g01320 627 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01320 Seca-Chr3 22768790 22772196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01320 1 617 Calmodulin-binding Proteins AT1G27460 57.649 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01320 K21843 - gmx:100780807 993.416