Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01306 ATGGCTTATGTGTTCTATAGTTGGTATGGGAGGTTTAACGGGTTAGCTGTCCGAAAAAGCAAGATAAGTTACAATTGTCGGAAGGAAGTTGTTGGTCGTGACTTTTTGTGCAACAAAGAGGGCAAACGGAGAAAACGAAATGATGATAGTGATTCAAAAGAAGAGCCCGAACGAGAGCCTAAACCGCTTACTAGGTGTGAGTGTAAAGCTAAATTTCGTGTGCATGTGGACTTTAATTCACATCGGTGGTATGTGACGTGTTTTGACAATAGACATAATCATGAGCTGCTGGATGAAAAGTTTTTGGGTATGCTGCCAGCTCATAGAAATATGAGTGAAGGGGATATTATAGAGATGAATAATATGTTAAAGGCTGGTATAGGGGCTCCACAAATTTACAATTCATTTGCAAGCCAAGCAGGAGGGTATGAGAAGGTTGGTTTTTGGAAGAAAGACATGTACAACGAAATTGATAAACAAAGGAAGTTACGAAATGGTGATGCCATGGCTGCATTAGAATATCTGGGAGGTTTAGGGAAGAAGGATAAGAAATTGTTTTGTCGGTACACAATTGATGAAGAAGGAAGGCTTGAGCACTTATTCTGGTCTGATGGATATAGTCAGATGGACTATAGCATATTTGGTGATGTAGTAGCATTTGATGCTACCTATGGTAAGAACAAGTATCGTTGCCCTCTTGTAATTTTTTCTGGTCTTAATCATCATAGTAAGTCAATTGTGTTTGCCACTGCTATCATTGCAAATGAAACAGAGGCAACCTATGTATGGCTTCTTGAGAAATTTCTAGATGGAATGAAAGGTAGTGCTCCTACATTGGTGATCACGGATGGTGACCTTGCAATGAAGAATGCTATTAAAAGGGTTTTTCCTAAGACTCACCACAGATTGTGTGCTTGGCACCTGATACGTAATGCCACTTCAAACATTTCAAATCCCACTTTTACTCAACTGTTCAAGAAATGCATGCTAGGTGATATTGAAATTCGTGACTTTCAACGAAAGTGGAGTGATATGGTGAAAAAGTGTAATGTGGAGGAGCATCGATGGGTCATTGAGATGTATGAACGGAGGAAAATGTGGGCCACATGCTACATTCGGGGGAATTTTTTTGCAGGATTTAGGACCACATCACGGTGCGAGGGTTTACATTCTGAAGTTGGGAAGTTCATTAATTCAAGATTGAGTTTGTGTGTGTTCTTGCAGCATTACTATTGTTGTTTGACTCATATGCGTTACAAGGAAGTGCAAGATGACTTCAAATCAGTGCATGGTGAGCCTGTTGTGCGTACTAGTTTTGCTTCACTTGAGAAGTCTGCTAGCAAAGTTTATACCAGGGAAGTGTTTCGTCTTTTTCGTTCTGTGTTAGAGAGGGCAGCCCATGTGAAAGTTGTTCGGTGGAAAGAAAAGTTCCCATGCTTCATTTACACTGTTGCCAAGTATAGAAAAGTAGGGAGGGAGTGGAACGTGACATTCTACCCTGCTGAAAGTGTTTACAAATGTTCTTGTATGAGAATGAAATCAATTGGGCTTCCATGTGACCATATAATTGGGGTTTTGGTTTACCAAGATATTTCAGAATTACCTAAACCCTTAGTACTTGATAGATGGTCAAAGGATGCAAAGCTGGGACTTCGTGGCATGAAAGGTAATGGAATTAATTTCTGTGACCCTCAATTGACAGCTAGATATTGGGCTTTGATGCACAGGTTTAGGGATGTGGCACGCGAAGCTGATGAAAATTTGGAAGATTACCATGATGCAGATGAGAATGCCATTAGTTTCCTTGCCCAGCTGAAAGAAAAAAAAGGCAAGGAGGAGTGGTGGAGATGCAACTGTTGTGGTTAA 1866 0.4051 MAYVFYSWYGRFNGLAVRKSKISYNCRKEVVGRDFLCNKEGKRRKRNDDSDSKEEPEREPKPLTRCECKAKFRVHVDFNSHRWYVTCFDNRHNHELLDEKFLGMLPAHRNMSEGDIIEMNNMLKAGIGAPQIYNSFASQAGGYEKVGFWKKDMYNEIDKQRKLRNGDAMAALEYLGGLGKKDKKLFCRYTIDEEGRLEHLFWSDGYSQMDYSIFGDVVAFDATYGKNKYRCPLVIFSGLNHHSKSIVFATAIIANETEATYVWLLEKFLDGMKGSAPTLVITDGDLAMKNAIKRVFPKTHHRLCAWHLIRNATSNISNPTFTQLFKKCMLGDIEIRDFQRKWSDMVKKCNVEEHRWVIEMYERRKMWATCYIRGNFFAGFRTTSRCEGLHSEVGKFINSRLSLCVFLQHYYCCLTHMRYKEVQDDFKSVHGEPVVRTSFASLEKSASKVYTREVFRLFRSVLERAAHVKVVRWKEKFPCFIYTVAKYRKVGREWNVTFYPAESVYKCSCMRMKSIGLPCDHIIGVLVYQDISELPKPLVLDRWSKDAKLGLRGMKGNGINFCDPQLTARYWALMHRFRDVAREADENLEDYHDADENAISFLAQLKEKKGKEEWWRCNCCG. 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01306 621 SMART 26again6 505 532 IPR006564 GO:0008270
Seca3g01306 621 Pfam MULE transposase domain 217 311 IPR018289 -
Seca3g01306 621 Pfam FAR1 DNA-binding domain 5 97 IPR004330 -
Seca3g01306 621 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 596 IPR031052 GO:0006355
Seca3g01306 621 ProSiteProfiles Zinc finger SWIM-type profile. 494 530 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01306 Seca-Chr3 22635137 22637002 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g01306 MULE 4.2e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01306 - - tpra:123913749 701.819