Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01290 ATGGAGGACGCGTTTGCCAGATCTATTCCCGAGGTCCTTGATTTCTTTGGAGTGGACCCGACAAAGGGTCTGTCTGACATTGAGGTTGTACAACATGCTAGACTTTATGGTACAAACGTGCTGCCTGAAGATCAAAGAGCTCCTTTTTGGAAGTTGGTTTTGAAGCAATTTGATGATTTGCTTGTGAAGATACTAATTGCAGCTGCACTTATATCATTTATTCTGGCGTTAATTAATGGAGAAACAGGCTTGATGGCATTTCTGGAGCCTTCTGTTATTCTGATGATATTGGCTGCAAATGCAGCTGTGGGAGTGATTACAGAAACAAATGCTGAAAAAGCTCTTGAGGAGCTACGTGCCTATCAAGCTGATGTGGCAACTGTCTTGCGAAATGGTTGTTTTTCCATACTTCCTGCAACTGAACTTGTTCCTGGGGATATTGTGGAGGTTTCTGTGGGGTGCAAAATTCCTGCTGATATGAGGATGATTGAGATGCTAAGTAATCAAGTGCGTGTTGATCAAGCTATTCTTACAGGTGAGAGCAGCTCCGTGGAAAAAGAGCTTAAAACCACCACAACAACAAATGCTGTGTACCAAGACAAAACAAATATTCTGTTCTCGGGAACAGTTATGGTTGCTGGTAGGGCAAGAGCTGTTGTGGTGGGAGTTGGTCCTAATACTGCCATGGGCAACATACGTGATTCAATGTTGCGAACAGAGGATGAGGTGACACCATTGAAAAAGAAGCTAGATGAGTTTGGTACCTTTTTGGCCAAGGTTATTGCTGGGATTTGTATATTGGTATGGATTGTAAACATCGGTCACTTTCGTGACCCTTCTCATGGTGGTTTCTTGCGTGGTGCAATTCATTATTTTAAGATTGCAGTTGCTCTGGCAGTTGCAGCAATTCCTGAAGGGCTCCCTGCTGTTGTTACAACGTGTTTGGCTCTTGGAACAAAGCGTATGGCGAGGTTGAATGCCATTGTCCGCTCTTTGCCATCCGTCGAGACCTTGGGCTGCACCACTGTAATTTGCAGTGACAAAACTGGGACTTTAACTACCAATATGATGTCTGTTGCGAAGATATGTGTTGTTGAATCTGCAAAACGTAGTCCTTTTGTTACCGAATACAGTGTCAGTGGAACAACATATGACCCTGAAGGCATAATCTTTGATAAGACAGGGATGCAGCTTGACTTTCCAGCTCAATTACCCTGTCTTCTTCACATGGCAATGTGCTCTGCTCTATGCAATGAATCAATCCTGCAGTATAATCCTGATAAAGGAAAGTTTGAAAAAATTGGTGAGTCAACTGAGGTGGCACTGCGTGTTTTGGCAGAAAAGGTGGGTCTTCCTGGTTTTAATTCTATGCCATCAGCCTTGAATATGTTGAGCAAGCATGAGCGTGCTTCTTACTGTAACCGTTACTGGGAGGAACAGTGTAGAAAGTATTTACCCTCACACTTTGAGCTTGATGCTTTGCAGTTAGATGTTTTGGAATTTTCTCGAGATAGGAAAATGATGAGTGTCCTTTGTAGCCGGAACCAGTTGCATGTTCTATTCTCAAAGGGTGCTCCAGAAAGTATAATCTCTAGATGTACAACCATTCTGTGCAATGATGATGGTTCTGTTGTGCCACTTACTGCTGATATTCGTGCAGAGCTGGACTCAAAATTCCACAGTTTTGCAGGAAAAGAAACATTGAGATGCCTAGCTTTGGCCTTGAAATCGATGCCCTCAGCACAACAAACACTGTCCTTTGATGATGAGAAAGATCTTACATTTATTGGATTGGTTGGGATGCTGGATCCACCAAGAGATGAAGTAAGAAATGCCATGCTTTCATGTATGACTGCTGGCATACGTGTTATAGTTGTCACTGGGGATAACAAGTCCACTGCTGAGTCACTTTGCCGCAAGATTGGTGCTTTTGATGATTTGATAGATTTTTCTGAACATTCTTACACTGCTTCTGAGTTTGAAGAACTTCCAGCACTGCAACAAACTATAGCATTGCAACGTATGGCACTTTTTACCAGGGTTGAGCCTTCTCATAAAAGGATGCTGGTTGAAGCATTACAGCACCAGAATGAAGTGGTTGCAATGACGGGTGATGGGGTCAATGACGCACCTGCACTGAAGAAGGCAGATATAGGAATTGCTATGGGTTCAGGGACAGCTGTTGCTAAGAGTGCTTCAGACATGGTGCTGGCTGATGATAACTTTGCTTCAATTGTTGCGGCTGTGGCAGAGGGAAGGGCTATATACAATAATACAAAACAGTTTATTAGATACATGATTTCTTCCAATATTGGTGAAGTAGTATGTATATTTGTGGCTGCTGTGCTTGGAATACCTGATACACTGGCCCCTGTCCAGTTGCTTTGGGTTAATTTGGTTACTGACGGATTGCCTGCCACTGCTATCGGGTTCAATAAGCAAGATTCTGATGTGATGAAGGCTAAGCCTCGAAAGGTGAATGAAGCAGTTGTTTCGGGTTGGCTCTTCTTTCGTTATTTGGTAATTGGAGCTTCTGTTGGCCTTGCCACCGTTGCCGGTTTTATTTGGTGGTTTGTTTATTCTGATAATGGCCCTAAACTACCATATGCTGAATTGATGAATTTTGACACTTGCCCAACCAGGGAGACAACTTATCCATGCAGTATTTTTGATGATCGACATCCATCAACTGTATCAATGACTGTGCTCGTCGTTGTTGAGATGTTCAATGCTTTGAACAACCTTAGTGAAAATCAATCTCTCCTAGTTATCCCTCCCTGGAGTAACTTGTGGCTTGTTGCTTCCATAGTCCTAACTATGGTTCTTCACATACTAATTTTGTATGTTCGTCCACTGTCAGTTCTTTTCTCTGTAACACCTTTATCTTGGGCTGACTGGATGGTTGTCCTCTATCTTTCACTACCTGTTATAATTATTGATGAGGTGTTGAAGTTCTTCTCCAGAAATCCCATTGGTTTGAGGTTCAGATTATGGTTCAGGAGGCCTGATTTGCTTCCTAAAAGAGAATTGCGAGATAAGTAA 3042 0.427 MEDAFARSIPEVLDFFGVDPTKGLSDIEVVQHARLYGTNVLPEDQRAPFWKLVLKQFDDLLVKILIAAALISFILALINGETGLMAFLEPSVILMILAANAAVGVITETNAEKALEELRAYQADVATVLRNGCFSILPATELVPGDIVEVSVGCKIPADMRMIEMLSNQVRVDQAILTGESSSVEKELKTTTTTNAVYQDKTNILFSGTVMVAGRARAVVVGVGPNTAMGNIRDSMLRTEDEVTPLKKKLDEFGTFLAKVIAGICILVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVESAKRSPFVTEYSVSGTTYDPEGIIFDKTGMQLDFPAQLPCLLHMAMCSALCNESILQYNPDKGKFEKIGESTEVALRVLAEKVGLPGFNSMPSALNMLSKHERASYCNRYWEEQCRKYLPSHFELDALQLDVLEFSRDRKMMSVLCSRNQLHVLFSKGAPESIISRCTTILCNDDGSVVPLTADIRAELDSKFHSFAGKETLRCLALALKSMPSAQQTLSFDDEKDLTFIGLVGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDDLIDFSEHSYTASEFEELPALQQTIALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVSGWLFFRYLVIGASVGLATVAGFIWWFVYSDNGPKLPYAELMNFDTCPTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVLTMVLHILILYVRPLSVLFSVTPLSWADWMVVLYLSLPVIIIDEVLKFFSRNPIGLRFRLWFRRPDLLPKRELRDK. 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01290 1013 NCBIfam calcium-translocating P-type ATPase, SERCA-type 53 858 IPR005782 GO:0005388|GO:0006816|GO:0016020
Seca3g01290 1013 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
Seca3g01290 1013 Coils Coil 111 131 - -
Seca3g01290 1013 NCBIfam HAD-IC family P-type ATPase 673 788 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g01290 1013 NCBIfam HAD-IC family P-type ATPase 92 369 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g01290 1013 Pfam Cation transporter/ATPase, N-terminus 8 72 IPR004014 -
Seca3g01290 1013 SUPERFAMILY HAD-like 590 751 IPR036412 -
Seca3g01290 1013 Gene3D - 355 604 IPR023299 GO:0000166
Seca3g01290 1013 FunFam Calcium-transporting ATPase 355 604 - -
Seca3g01290 1013 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 601 IPR023299 GO:0000166
Seca3g01290 1013 FunFam Sodium/potassium-transporting ATPase subunit alpha 596 742 - -
Seca3g01290 1013 Pfam E1-E2 ATPase 122 324 - -
Seca3g01290 1013 Gene3D - 22 237 - -
Seca3g01290 1013 CDD P-type_ATPase_SERCA 5 988 - -
Seca3g01290 1013 Pfam haloacid dehalogenase-like hydrolase 594 717 - -
Seca3g01290 1013 PANTHER CALCIUM-TRANSPORTING ATPASE 11 989 - -
Seca3g01290 1013 Gene3D - 55 988 - -
Seca3g01290 1013 PRINTS P-type cation-transporting ATPase superfamily signature 726 738 - -
Seca3g01290 1013 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Seca3g01290 1013 PRINTS P-type cation-transporting ATPase superfamily signature 619 629 - -
Seca3g01290 1013 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Seca3g01290 1013 PRINTS P-type cation-transporting ATPase superfamily signature 597 608 - -
Seca3g01290 1013 PRINTS P-type cation-transporting ATPase superfamily signature 703 722 - -
Seca3g01290 1013 FunFam Calcium-transporting ATPase, putative 214 341 - -
Seca3g01290 1013 FunFam Calcium-transporting ATPase 112 237 - -
Seca3g01290 1013 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Seca3g01290 1013 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 699 992 - -
Seca3g01290 1013 SFLD p-type atpase 326 755 IPR044492 -
Seca3g01290 1013 Pfam Cation transport ATPase (P-type) 415 536 - -
Seca3g01290 1013 Gene3D - 342 747 IPR023214 -
Seca3g01290 1013 Pfam Cation transporting ATPase, C-terminus 787 986 IPR006068 -
Seca3g01290 1013 PRINTS H+-transporting ATPase (proton pump) signature 734 759 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g01290 1013 PRINTS H+-transporting ATPase (proton pump) signature 703 719 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g01290 1013 PRINTS H+-transporting ATPase (proton pump) signature 675 691 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g01290 1013 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 988 IPR023298 -
Seca3g01290 1013 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
Seca3g01290 1013 SFLD C1.7: P-type atpase like 326 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01290 Seca-Chr3 22378129 22427641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01290 1 1013 Primary Pumps ATPases(2) AT1G10130 83.218 0.0 1721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01290 K05853 - gmx:100783509 1847.02