Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01276 ATGTGTTTCCACAACGACGAAGCGATCCAGTCTCCGGTTCTCAAAACCATGCTGACAGAAAGTGAAATACAATACCTCTTTTCCCTCATTAATCATCAATCCACAGAACCGGCCAGCCCAAGCTCCGGTTCACAAGGATTGAACCGGGCGGTTTACTCAACAAAGGAAAGAAAGCTCAGGCGCATGCAATCGAACCGGGAATCGGCCCGACGGTCCAGGTGCAAAAAGAAGAAGCATTTAGAAAACCTCACGAACCAAGTGAACCACTTGAGAATTCAAAACCGAGAACTCAAAAACCGATTAGCCTTCACCATGCATCAGCATCTCCTCCTATCCCTACAGAATGATCAACTAAGATCCGAATTCGTTAACCTTCTAGCCAAACTTTCGGATCTATGTGGGATTTTAAACACTATGTTTTCACAATAG 429 0.4499 MCFHNDEAIQSPVLKTMLTESEIQYLFSLINHQSTEPASPSSGSQGLNRAVYSTKERKLRRMQSNRESARRSRCKKKKHLENLTNQVNHLRIQNRELKNRLAFTMHQHLLLSLQNDQLRSEFVNLLAKLSDLCGILNTMFSQ. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01276 142 MobiDBLite consensus disorder prediction 53 69 - -
Seca3g01276 142 MobiDBLite consensus disorder prediction 34 51 - -
Seca3g01276 142 Coils Coil 80 100 - -
Seca3g01276 142 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 55 102 IPR004827 GO:0003700|GO:0006355
Seca3g01276 142 SUPERFAMILY Leucine zipper domain 57 109 IPR046347 GO:0003700|GO:0006355
Seca3g01276 142 Coils Coil 52 72 - -
Seca3g01276 142 Gene3D - 55 108 - -
Seca3g01276 142 CDD bZIP_plant_GBF1 58 108 IPR045314 GO:0003700|GO:0006355
Seca3g01276 142 PANTHER BZIP TRANSCRIPTION FACTOR 44 35 139 - -
Seca3g01276 142 Pfam bZIP transcription factor 57 101 IPR004827 GO:0003700|GO:0006355
Seca3g01276 142 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 60 75 IPR004827 GO:0003700|GO:0006355
Seca3g01276 142 MobiDBLite consensus disorder prediction 34 76 - -
Seca3g01276 142 SMART brlzneu 53 117 IPR004827 GO:0003700|GO:0006355
Seca3g01276 142 FunFam BZIP transcription factor 55 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01276 Seca-Chr3 22127008 22127436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01276 12 142 bZIP Transcription Factor Family AT3G49760 38.406 2.05e-18 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g01276 bZIP_1 7.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01276 - - gmx:102661984 197.593