Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01267 ATGGATCTTGGGGCGGTGGGTTTGGATGGGTTGGTGGGTTCAGACACTGGTTTTGTTCCTCTTGCTTCTACAGATCCCGAAACTAAGCACAGTAAGTGGTACGGATCTGGGTTCCTTAAGCAACAGAGATCTGCCATCACTGAAGATGAGTGGAGGAGTTCCAAACTGGCTAAGACTGATGACACTTCTGCTTCCAAAGCAATGCTTTTCCAGCACAAGAACTCCTTACTGAGATCTAATGCTACTCTCTTTTCTGATGGTCAGCACCAACAACAAATGCTGAGTTTCTCTTCTCCAAAGTCAGAGTCTTTGTTAGTGGAAAAGAGCCCCCAGAATGTCACATTTCCATATTCTTTCCACCCATTGTCTAGTTACAACAGAAATACAGGTTACAATTCTGGAAGCATGCATGGGATGGTAACAGGGGCAAGAGGGCCATTCACTCCTTCTCAGTGGATGGAGCTAGAACACCAGGCCCTGATCTACAAATACATAACATCAAATGTTCCTGTACCATCTCATCTTCTCATCCCCATCAAGAAAGCACTTGAATCTGCTGGCTTCTATAACTTGTCAACAGGTCTTTTGAGACCCAATGCCATGGGGGGATGGGGAGGGTTCCATCTGGGGTTCTCGAATAACACAGATCCTGAGCCAGGAAGGTGTAGGAGAACAGATGGGAAGAAATGGCGATGCTCAAGAGATGCCGTTGTGGACCAAAAGTATTGTGAACGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCGTCACCGTGGGGACCACCACCACCAACAACAACACGGTTCCCTCAACCACTGTATCCACCTTTGCACAACATCATCAACAACCACCTAAGAATATGCACCCTCTTGCATCTGATACCTCTTCGCCTAACAACATCAATAGGATGTTTATGAATAACAAGGAGAATGGCAGTGAGAGAATCCCTGAGGCTAATGATGCCCTTCCAATGTTGCCTGCTACACTTGAGCTGAAACACAAGGAAAACCACCCTTTTATGATTCATAAACAGCAAATCCAATATGAAGAAGAGTCGTCAAGGAATGAGTTTGGGCTTGTCACATGTGATTCCTTACTTAACCCTTCTCAGAAAAGTAGCTCCACTTTGCTTAGCAGCAGAAGCTTTGGTTCATCAACTAACAGAGAAACTGATTCAGAACAACATTCCCTTAGGCAATTCATTGATGACTGGCCCAAAACTCAGTCTAATCATAGCTCATGGCCAACAGAACTTGATGTGCAACAAGAGAGGACTGAACTCTCAATTTCCATTCCAACAGATTTCATGTCATCAACTTCCTCTCCCACCAATGACAAGGTCACATTATCACCTTTAAGGCTATCAAAGGAGTTAGACCCAATTCAAATGGGTTTGGGTGTTGGAAACAATGCTTCTTCTATCTATGAGCCAAACAGTACTAGGCATCAAGGTGGTAATTGGATTCCAATTGCTTGGGAGAGTTCTATGGGTGGTCCTCTTGGAGAGGTTCTCAATCTTAGCAATAACAATGCAAGTGATCACTGTAATGTTAAGAATTCCTCTGCTCTTAACCTCATGACTGATGGGTGGGACAATAGCCCCCCATTAGGGTCCTCTCCAACTGGGGTTTTGCAAAAAGCAACATTTGTATCTTTATCCAATAGCAGTGCTGGGAGCAGTCCAAGGGCAGAGAATAAGGCACAAGAAGGAGCCAGCTTGTGCAATGACCTCCTTGGTTCAACTCTATAG 1779 0.4508 MDLGAVGLDGLVGSDTGFVPLASTDPETKHSKWYGSGFLKQQRSAITEDEWRSSKLAKTDDTSASKAMLFQHKNSLLRSNATLFSDGQHQQQMLSFSSPKSESLLVEKSPQNVTFPYSFHPLSSYNRNTGYNSGSMHGMVTGARGPFTPSQWMELEHQALIYKYITSNVPVPSHLLIPIKKALESAGFYNLSTGLLRPNAMGGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHAVTVGTTTTNNNTVPSTTVSTFAQHHQQPPKNMHPLASDTSSPNNINRMFMNNKENGSERIPEANDALPMLPATLELKHKENHPFMIHKQQIQYEEESSRNEFGLVTCDSLLNPSQKSSSTLLSSRSFGSSTNRETDSEQHSLRQFIDDWPKTQSNHSSWPTELDVQQERTELSISIPTDFMSSTSSPTNDKVTLSPLRLSKELDPIQMGLGVGNNASSIYEPNSTRHQGGNWIPIAWESSMGGPLGEVLNLSNNNASDHCNVKNSSALNLMTDGWDNSPPLGSSPTGVLQKATFVSLSNSSAGSSPRAENKAQEGASLCNDLLGSTL. 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01267 592 MobiDBLite consensus disorder prediction 378 400 - -
Seca3g01267 592 MobiDBLite consensus disorder prediction 378 405 - -
Seca3g01267 592 Pfam QLQ 146 179 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca3g01267 592 Pfam WRC 217 259 IPR014977 -
Seca3g01267 592 ProSiteProfiles WRC domain profile. 216 260 IPR014977 -
Seca3g01267 592 MobiDBLite consensus disorder prediction 249 281 - -
Seca3g01267 592 ProSiteProfiles QLQ domain profile. 146 181 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca3g01267 592 PANTHER GROWTH-REGULATING FACTOR 5 88 446 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca3g01267 592 SMART QLQ_2 145 181 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca3g01267 592 MobiDBLite consensus disorder prediction 264 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01267 Seca-Chr3 21998454 22002347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01267 35 559 GRF Transcription Factor Family AT2G22840 42.336 1.98e-103 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca3g01267 WRC 5.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01267 - - aprc:113865097 837.025