Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01266 ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTTGTAGGGGGCATTTCACGGGACACCACCGAAGATATTCTCAAGCACCACTTCGCCAAGTACGGCGCCGTTTTGGATTCGACGATTTCTGTAGACCGCGGCACCCGAAGCCCTAGAGGTTTTGGCTTCGTTACCTTCTCTGATCTCGCTGCAGCTGACAGAGCCCTTCAAGACACCCATGTTATACTCGGAAGAACGGTAGAAGTGAAAAAAGCAATACCAAGAAGTGAACAGCAACACCAAAACCAATTACAGAATAGAGGAGGAAGTAACTATAGTAGTTATGACTGTAGCAGTGACCAAATTAGGACTAAAAAGATTTTTGTAGGAGGTTTACCTGCTGGTATATCTGAGGAGGAGTTTAAGAAATACTTTGAGAGGTTTGGTCGAATAACAGATGTAGTAGTGATGCAGGACAGTGTAACTCACAGGCCGAGGGGATTTGGGTTCATCACTTTTGATTCAGAAGAATCTGTGCAAAACGTTATGGTGAAAAATTTCCATGATTTAAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCGAAAGAGGGGAACTCTGGATATGATGGTTTTAATAAATTAAGATATAGGAGTGAAAGAGGAGGAGCTAATAAAAGTTTTTCTCATTATAGTCCTAGAAACATGCTCCCTGGCTTTGCTCCTTTGCCTTGGTATAGTAGTGATGGAGTATATCCGTATGGATCTAACACCTACGGTTGCTGGTACCCTATGGGTGGGTATGGGGGGAATGGATATGCAGTTCCATCTGATGCTTATAGGAACTTCTGGTATGGGCACATGATAGCCAGTCCTCAGGTGCCTTATGCTAATGCTTCGCCGAGTGTTGCATATGTGGGTGGTAGGGTTGGAATGGTAGGTAGTGGTGCTGGGACTTGGGGATACAATGGCATTCTTGGGTCTGCAACGAATTTGAAATTTGAACAACCTTTTAATGCCAATGGATTTGTTCCAGGCAATGTGACACCACCTCATGGTGTAAAGCAGGATGTTGACTCTTCAAGTTTGAAAGTGAGCAATGGTGAAATTTCTAGTTAA 1095 0.4384 MNLKMDSDRAKLFVGGISRDTTEDILKHHFAKYGAVLDSTISVDRGTRSPRGFGFVTFSDLAAADRALQDTHVILGRTVEVKKAIPRSEQQHQNQLQNRGGSNYSSYDCSSDQIRTKKIFVGGLPAGISEEEFKKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKNFHDLNGRQVEVKRAVPKEGNSGYDGFNKLRYRSERGGANKSFSHYSPRNMLPGFAPLPWYSSDGVYPYGSNTYGCWYPMGGYGGNGYAVPSDAYRNFWYGHMIASPQVPYANASPSVAYVGGRVGMVGSGAGTWGYNGILGSATNLKFEQPFNANGFVPGNVTPPHGVKQDVDSSSLKVSNGEISS. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01266 364 MobiDBLite consensus disorder prediction 346 364 - -
Seca3g01266 364 MobiDBLite consensus disorder prediction 337 364 - -
Seca3g01266 364 MobiDBLite consensus disorder prediction 85 108 - -
Seca3g01266 364 SMART rrm1_1 11 82 IPR000504 GO:0003723
Seca3g01266 364 SMART rrm1_1 118 190 IPR000504 GO:0003723
Seca3g01266 364 MobiDBLite consensus disorder prediction 88 108 - -
Seca3g01266 364 Gene3D - 115 202 IPR012677 -
Seca3g01266 364 FunFam RNA-binding protein 1 113 203 - -
Seca3g01266 364 SUPERFAMILY RNA-binding domain, RBD 6 107 IPR035979 GO:0003676
Seca3g01266 364 Gene3D - 2 114 IPR012677 -
Seca3g01266 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Seca3g01266 364 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 296 - -
Seca3g01266 364 SUPERFAMILY RNA-binding domain, RBD 110 214 IPR035979 GO:0003676
Seca3g01266 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Seca3g01266 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Seca3g01266 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Seca3g01266 364 CDD RRM2_Hrp1p 118 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01266 Seca-Chr3 21919351 21921475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01266 12 268 Eukaryotic Initiation Factors Gene Family AT4G34110 26.792 3.53e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01266 K14411 - gmx:100816822 587.415