Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01264 ATGGTTGATGATTTAATCAAACTTTGCATGATGCAGTGTATTTGGGGGGTTATGATATGGAAGAGAAAGCAGCAAGAGCCTATGATCTTGCAGCACTTAAAATCCCATTCTTTATCTTCAATTTGGCAGTTGGAAAATTACCAAACTCAACTTGAAGAAATGAAGAACATGACCAGGCAGGAATATGTTGCCCACTTGAGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCTTCAATGTACAGAGGAGTGACAAGACACCACCAACATGGCAGATGGCAAGCAAGAATAGGCAGAGTTGCTGGAAACAAGGACCTTTACCTTGGGACATTCAGCACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCTGCAATCAAATTCCGTGGAGTAAATGCAGTCACAAATTTTGACATATCAAGATATGATGTTGAAAGGATCATGGCCAGCAATACTCTGCTAGCTGGGGAGCTGGCAAGGAGAAACAAAGATAATGATCCAAGAACTGAAGCCATTGACTATAACAATAGTGTATCAAGCCAAAACAATGTGGAAGCAGTTCAAGGTAGAAACAACAATGAAAATGACACAGACTGGAAGATGGTTTTGTATCATAATCCACAGCAACAATCAAATAGCTGTGACCAAAAAATCATGAACTGTGGGAATTATAGAAACTCTGCTTTCTCTATGGCCCTACAAGACCTTATTGGGATTGAATCAGTAGGTTCTGGCCAACCCATGCTAGATGAGTCTAGCAAGGTTGGGACTCATTTTTCAAACCCATCCTCTCTAGTGACCAGTTTAAGCAGTTCAAGAGAAGCTAGCCCTGAGAAAACAGGTCCTTCACTACTCTTTCCAAAGCCACCAATGGAAACAAAAATTGTCAACCCAATTGCCAGTGGTGTTACTTCTTGGTTTCCATCACCAACCATGAGGCCAGCTGCTGCTATCAATTTGTCTCACTTGCCAGTTTTTGCTGCTTGGAATGATACCTAG 996 0.4167 MVDDLIKLCMMQCIWGVMIWKRKQQEPMILQHLKSHSLSSIWQLENYQTQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKDNDPRTEAIDYNNSVSSQNNVEAVQGRNNNENDTDWKMVLYHNPQQQSNSCDQKIMNCGNYRNSAFSMALQDLIGIESVGSGQPMLDESSKVGTHFSNPSSLVTSLSSSREASPEKTGPSLLFPKPPMETKIVNPIASGVTSWFPSPTMRPAAAINLSHLPVFAAWNDT. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01264 331 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 43 216 - -
Seca3g01264 331 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Seca3g01264 331 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Seca3g01264 331 SUPERFAMILY DNA-binding domain 78 139 IPR016177 GO:0003677
Seca3g01264 331 MobiDBLite consensus disorder prediction 251 288 - -
Seca3g01264 331 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Seca3g01264 331 PRINTS Ethylene responsive element binding protein signature 119 139 IPR001471 GO:0003700|GO:0006355
Seca3g01264 331 MobiDBLite consensus disorder prediction 251 277 - -
Seca3g01264 331 FunFam AP2-like ethylene-responsive transcription factor 78 139 - -
Seca3g01264 331 CDD AP2 78 139 IPR001471 GO:0003700|GO:0006355
Seca3g01264 331 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
Seca3g01264 331 Pfam AP2 domain 80 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01264 Seca-Chr3 21891171 21892996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01264 42 163 AP2-EREBP Transcription Factor Family AT4G37750 86.885 4.93e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g01264 AP2 1.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01264 K09285 - gmx:100787223 473.396