Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01253 ATGGGAAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCACCAGAAGAAGATTCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGTGGTCTTAAGCGATGTGGCAAGAGTTGCCGCCTTCGCCCTAATATCAAGCATGGAGGTTTCTCAGAAGAAGAAGACAACATTATTTGCAGCCTTTACATTAGTATTGGAAGCAGATGGTCGGTTATTGCAGCGCAATTGCCAGGAAGAACTGATAATGATATAAAGAATTACTGGAACACGAGGCTGAAGAAGAAGCTTTTAGGGAAGCACCGTAAGGAACAACAAGCACGTAATAAAAGCAATAGAGGAGGGAATGGGGATTCTTCATCTTTGGTTAGTACTGCAGAGAATAGTACTAACGGTAATAGTCACCAACAACAGGAATATTGGCCTCAGATGCCTGTAGTGGTGCCACCTTTGGCTTATACAACAAACCAATTAGCACTTCCTCCTCCGAGTTTCAACGATCAAGATTCTATTAGGAAATTGTTAATCAAGCTTGGAGGAAGATTCTGTGATGATAATTATTATCAGCCCATCCTTGATGGTTTGAACAATAATCATCTTCAATTCCATGATGATGGTCATGATCTTCTTCCCTCAACACAACAAATTGATCATCATCATTATGATATTGGATCTTCTGGCAACAACAACCAAGTACAATTCTCTCAGACTCATGATCAGTATTGTTGTCCTGTTGAAGGGGCAAGAGAAACTGAAGGTAGTTTCACAGCAGCATTAATAGGGGAGATGGCTACTTCAAGTGATTATTCACAGAGATTAAGTGGGTTGGAGTTTTTGTATGGAGAGGACATGATTAGTGATAATAAGATTACAGTTACAAGCACTAGTCCTATTTGTGGCCAAAGTGGTGCTAACTGGGGTGAGAGCAGTGCTCTGATATATCCTCCTCCAATTGTTGCTTCGAATATTAATTACCAGCAGATCAGTGTGAAGCAAGAGATGCCTCAACAAGAATGTGTATTTCAAGAGTTAAGCTACCCTGGGGGTAGTCAATAG 1068 0.4139 MGRAPCCDKANVKKGPWSPEEDSKLKSYIEQHGTGGLKRCGKSCRLRPNIKHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQARNKSNRGGNGDSSSLVSTAENSTNGNSHQQQEYWPQMPVVVPPLAYTTNQLALPPPSFNDQDSIRKLLIKLGGRFCDDNYYQPILDGLNNNHLQFHDDGHDLLPSTQQIDHHHYDIGSSGNNNQVQFSQTHDQYCCPVEGARETEGSFTAALIGEMATSSDYSQRLSGLEFLYGEDMISDNKITVTSTSPICGQSGANWGESSALIYPPPIVASNINYQQISVKQEMPQQECVFQELSYPGGSQ. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01253 355 Gene3D - 54 122 - -
Seca3g01253 355 ProSiteProfiles Myb-like domain profile. 9 97 IPR001005 -
Seca3g01253 355 MobiDBLite consensus disorder prediction 103 142 - -
Seca3g01253 355 Gene3D - 11 50 - -
Seca3g01253 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 35 IPR017930 -
Seca3g01253 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 101 IPR017930 -
Seca3g01253 355 PANTHER OS09G0431300 PROTEIN 1 244 - -
Seca3g01253 355 Pfam Myb-like DNA-binding domain 53 95 IPR001005 -
Seca3g01253 355 SMART sant 13 99 IPR001005 -
Seca3g01253 355 SUPERFAMILY Homeodomain-like 11 93 IPR009057 -
Seca3g01253 355 CDD SANT 16 97 IPR001005 -
Seca3g01253 355 FunFam Transcription factor RAX3 54 124 - -
Seca3g01253 355 MobiDBLite consensus disorder prediction 114 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01253 Seca-Chr3 21544839 21546334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01253 1 181 MYB Transcription Factor Family AT3G49690 57.214 1.65e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g01253 Myb_DNA-binding 5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01253 K09422 - gmx:778079 392.119