Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01248 ATGGGTTATGATATCTCAAACTCATCAAACCCAGGCCTTCTTCGACTCGGTCTTGGTCTTGGCTTCCGCGATCAATCCTCAGAGAATTGCATGAAGACCGATGAACCCAAGCAGCAGAGGAATAATAAGAAAAAGGAAGAGGATCATCATCCATGTAATAATAAGGCATATCCTTCTCTTACATTAGGACTCCCTCATGATCATGATCAACTAGTTGTGGCTACAAAGACAGATCAATCCGATGATCAGTTTTTTCATCCACACGCTATATCTTCTCCAAGCGCTGTTTCTTCATTCTCCAACTCTTCTGGTATCAAGAGGGAGAGAGATCAGTTCTCAGGAGAATTAGAAGAACTTGAGGTTGAGGTTGAGGTAGAGGGAGAGAAGATTTCATCAACGGTTGATGAAAATGGTAATCCCAAGAAGAAACTAAGGCTCACCAAAGATCAATCCGCTGTCTTAGAGGATAGCTTCAAACAGCATTCTACTCTCAATCCGAAACAAAAGCAAGAATTGTCAAGGAAGCTGAATCTGCGGGAGAGACAAGTGGAGGTGTGGTTTCAGAACAGGAGAGCCAGGTAA 582 0.4296 MGYDISNSSNPGLLRLGLGLGFRDQSSENCMKTDEPKQQRNNKKKEEDHHPCNNKAYPSLTLGLPHDHDQLVVATKTDQSDDQFFHPHAISSPSAVSSFSNSSGIKRERDQFSGELEELEVEVEVEGEKISSTVDENGNPKKKLRLTKDQSAVLEDSFKQHSTLNPKQKQELSRKLNLRERQVEVWFQNRRAR. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01248 193 MobiDBLite consensus disorder prediction 24 63 - -
Seca3g01248 193 Gene3D - 147 193 - -
Seca3g01248 193 Pfam Homeodomain 141 193 IPR001356 GO:0003677
Seca3g01248 193 CDD homeodomain 140 193 IPR001356 GO:0003677
Seca3g01248 193 Coils Coil 102 129 - -
Seca3g01248 193 MobiDBLite consensus disorder prediction 83 108 - -
Seca3g01248 193 SUPERFAMILY Homeodomain-like 135 193 IPR009057 -
Seca3g01248 193 MobiDBLite consensus disorder prediction 83 107 - -
Seca3g01248 193 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 18 193 - -
Seca3g01248 193 SMART HOX_1 139 193 IPR001356 GO:0003677
Seca3g01248 193 MobiDBLite consensus disorder prediction 28 53 - -
Seca3g01248 193 ProSiteProfiles 'Homeobox' domain profile. 137 193 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01248 Seca-Chr3 21437537 21438468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01248 89 193 Homeobox Transcription Factor Family AT5G06710 55.556 6.24e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca3g01248 Homeodomain 4.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01248 K09338 - gmx:100790927 192.2