LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g01245	ATGGAGGAATACACTAATAACCATCACTTAAGTCCAAGTCCAACGGCAAATTTGTTATACTCTTCCGCTGGTGGTTCAAGCATAGGAAACCGCCATCTTCATGTTCCTATCAACACCTTTCATCTTCAATCCGGTTCTGGATCGGATCACTGCTTTCAATCCAACAGCAATAACTCACCGATTTTCCACTATCCTTTAATGAGAGGAAATCTTGTGCAAGAAGGAGGGAGCCAGCAGAGCTCTAATGAAGTTGAAGCCATAAAAGCCAAAATCATTGCTCATCCTCAATACTCCAATCTTTTACAAGTTTACATGGATTGCCAAAAGGTTGGAGCGCCGCCTGAAGTGGCGGCGCGTTTGGCTGAGGTTGGACAGGATTTTGAGGCGCGGCAGCGATCTACGGTTAGTTCATCAAGGGAAAGTAGCAAGGATCCAGAGCTTGACCAATTCATGGAAGCTTATTATGACATGCTTGTGAAGTACCGTGAGGAATTAACGAGGCCTATACAAGAGGCGATGGATTTCATGCGGAGGATAGAAACTCAACTCAACATGCTTCGCAATAATGGACCCCTTCGGATCTTCTCTGCAGATGATAAATGTGATGAAGTTGGTTCATCGGAAGATGATCAAGAGAACAGTGGTGGAGAAACAGAACCGCTAGAGATTGATCCACGAGCTGAAGACCGTGAACTAAAAAACCACTTGCTCAAGAAGTATAGCGGTTACTTAAGTAGCCTAAAGCAAGAGCTTTCAAAGAAAAAGAAAAAAGGAAAACTACCTAAAGATGCTAGGCAAAAGCTTCTTAGCTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCTGAAAAGGTGGCGTTGGCTGAATCAACCGGTTTGGATCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCATCTGAAGACATGCAACTTATGGTGATGGATGGCCTGCATCCACATAACGCATCTCTCTACATGGATGGCCATTACATGACTGATGGTCATTACCGATTTGGGCCATAA	1050	0.4362	MEEYTNNHHLSPSPTANLLYSSAGGSSIGNRHLHVPINTFHLQSGSGSDHCFQSNSNNSPIFHYPLMRGNLVQEGGSQQSSNEVEAIKAKIIAHPQYSNLLQVYMDCQKVGAPPEVAARLAEVGQDFEARQRSTVSSSRESSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLRNNGPLRIFSADDKCDEVGSSEDDQENSGGETEPLEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQLMVMDGLHPHNASLYMDGHYMTDGHYRFGP.	350

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g01245	349	FunFam	Homeobox protein knotted-1-like 2	256	318	-	-
	Seca3g01245	349	CDD	homeodomain	263	315	IPR001356	GO:0003677
	Seca3g01245	349	SUPERFAMILY	Homeodomain-like	252	327	IPR009057	-
	Seca3g01245	349	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	70	319	-	-
	Seca3g01245	349	Pfam	KNOX2 domain	142	186	IPR005541	GO:0003677\|GO:0005634
	Seca3g01245	349	SMART	HOX_1	253	318	IPR001356	GO:0003677
	Seca3g01245	349	Pfam	KNOX1 domain	86	128	IPR005540	GO:0003677\|GO:0005634
	Seca3g01245	349	ProSiteProfiles	ELK domain profile.	231	251	IPR005539	GO:0003677
	Seca3g01245	349	Pfam	Homeobox KN domain	271	310	IPR008422	GO:0003677\|GO:0006355
	Seca3g01245	349	SMART	KNOX1_2	85	129	IPR005540	GO:0003677\|GO:0005634
	Seca3g01245	349	MobiDBLite	consensus disorder prediction	201	228	-	-
	Seca3g01245	349	ProSiteProfiles	'Homeobox' domain profile.	251	314	IPR001356	GO:0003677
	Seca3g01245	349	ProSitePatterns	'Homeobox' domain signature.	289	312	IPR017970	GO:0000981\|GO:0006355
	Seca3g01245	349	MobiDBLite	consensus disorder prediction	203	217	-	-
	Seca3g01245	349	Pfam	ELK domain	231	252	IPR005539	GO:0003677
	Seca3g01245	349	Gene3D	-	256	318	-	-
	Seca3g01245	349	SMART	KNOX2_2	137	188	IPR005541	GO:0003677\|GO:0005634
	Seca3g01245	349	Coils	Coil	169	189	-	-
	Seca3g01245	349	SMART	ELK_2	231	252	IPR005539	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g01245	Seca-Chr3	21391752	21398107	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g01245	48	349	Homeobox Transcription Factor Family	AT4G08150	70.062	6.14e-145	414

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Seca3g01245		KNOX2	2.6e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g01245	-		-	aprc:113866252	524.628