Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01240 ATGATCCAAATCCCAAACCTTCAAATTCCTGATTGGGACACATCTCAATCCGATGGAGGAAATGACACCTTCATCGGAGAAGATTTCGACGTCCCCATCCACCCTTTCTCCACTGATCAATTCCGAATGTTCGAGTTCAAAGTGAGGAACTGCCAGCGTGGCAGGTCACACGACTGGACGGAATGTCCCTACGCACATCCCGGCGAGAAGGCTCGCCGGAGAGATCCTCGGAAACACCACTATTCCGGCAACCCCTGCCCTGAGTTTCGCAAAGGAAACTGCACGAAAGGTGATTCCTGCCACTTCTCTCATGGCGTATTCGAATGCTGGCTTCACCCTTCTCGTTACAGAACCCAGCTTTGCAAGGACGGAACCGCTTGCCGCCGGCGAGTGTGTTTCTTCGCTCACACCGCCGAACAACTCCGTCTCTTCGTCACTCATGCCTCGCACGAATCGTTTCTTTCTTCGCCTACTTCGGTTCTTAACTCTTCTCCTCTCTCCGTTTCGCCTCCCCGAAACTCACGATACGGCGTCGTACCGTTAAGCACAGCGAGCGTGGGTGAAATAGTGGGTTCAATGCGTAATGTTCAGATTGAAGAGGGGAATTCGGATTCAGCCAGGGGAACCAAGATGGGTTGTGTGTTTGGGTCTCCGCGAGGAACGCTGTTTGGATGCGAAGAAGAGCCTGCTATGGAGAGAGTGGAATCGGGAAGGGACCTTAGAGCGAGAATCTATGCGAAGCTTAGTAGGGAGAATTCCATGAACGCAGCGTTTTATTCAGCTCCTATACCTGATATTGGATGGGTCTCGGAACTGGTGAAGTGA 825 0.5212 MIQIPNLQIPDWDTSQSDGGNDTFIGEDFDVPIHPFSTDQFRMFEFKVRNCQRGRSHDWTECPYAHPGEKARRRDPRKHHYSGNPCPEFRKGNCTKGDSCHFSHGVFECWLHPSRYRTQLCKDGTACRRRVCFFAHTAEQLRLFVTHASHESFLSSPTSVLNSSPLSVSPPRNSRYGVVPLSTASVGEIVGSMRNVQIEEGNSDSARGTKMGCVFGSPRGTLFGCEEEPAMERVESGRDLRARIYAKLSRENSMNAAFYSAPIPDIGWVSELVK. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01240 274 ProSiteProfiles Zinc finger C3H1-type profile. 81 107 IPR000571 GO:0046872
Seca3g01240 274 FunFam Zinc finger CCCH domain-containing protein 66 38 106 - -
Seca3g01240 274 PANTHER UNKEMPT FAMILY MEMBER 34 274 IPR045234 -
Seca3g01240 274 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 105 IPR000571 GO:0046872
Seca3g01240 274 Gene3D - 81 143 - -
Seca3g01240 274 SMART c3hfinal6 80 106 IPR000571 GO:0046872
Seca3g01240 274 SMART c3hfinal6 115 138 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01240 Seca-Chr3 21292205 21293029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01240 19 142 C2H2 Transcription Factor Family AT5G12850 61.654 4.79e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g01240 zf-CCCH 3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01240 - K23048 mtr:11430634 336.265