Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01223 ATGCGGATAAACCATGGATCATTACGTCTTTTCTCCTGCAGCGGCTTGCAGAAGTATTTGAATCAGCTAGGGTTTCATATAGTTGGGTGTGGATGTACCACATGCATTGGAAATTCAGGGGATATTGATAAAGCTGTTGTATCTGCAATTACTGAAAATGATATAGTAGCTGCAGTTGTATTGTCTGGAAATAGGAACTTTGAGGGCAGAGTTCATCCATTAACAAGGGCTAATTATCTTGCTTCTCCTCCTCTTGTTGTAGCCTATGCCCTTGCTGGGACAAAAGCTCTAGTCTTCAGACAAGGAAGCCTGTATAAAGCTTTCCACTATTTAGACAACAGCAGTTTCTGTCCTGCGAGCTATGTACATGGTTCGCCTTTGCTTGAAAACTCTAGTGCATTTGAGTCACGAGATTCTGCGGAAAGAACAGCAGAAGCTCTTGGCAGGGTTCTGGTGCTAGACCTTGTCATAAAAATTGAAGATAGGCTCCCTTGCTGTGAGCTTAGATGGTGTGGGAATTCTGCAAATTTGTTGTTGTCTGAAAAGCTGATCTCTGCACATACAGATACACTAGAAGCAGCTTTTGATTCTGCAATTAATCGATACAGACCAAAGGTGATTAGGGCACTTCAAAGAGAAAGAAGATCAACTTCAGTAGATAGTAGATTAAATTCTCATAATCCTGGCTTGATATCACAAGCCTCTGATCTTTCAAAGATTGCAGAATTACCAAGATCCAATGACACTAGCCTTAAGGCGCTCATGGCGTGA 771 0.4176 MRINHGSLRLFSCSGLQKYLNQLGFHIVGCGCTTCIGNSGDIDKAVVSAITENDIVAAVVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTKALVFRQGSLYKAFHYLDNSSFCPASYVHGSPLLENSSAFESRDSAERTAEALGRVLVLDLVIKIEDRLPCCELRWCGNSANLLLSEKLISAHTDTLEAAFDSAINRYRPKVIRALQRERRSTSVDSRLNSHNPGLISQASDLSKIAELPRSNDTSLKALMA. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01223 256 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Seca3g01223 256 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 11 101 IPR006249 -
Seca3g01223 256 Gene3D Aconitase, domain 3 8 109 IPR015931 -
Seca3g01223 256 Gene3D - 127 241 IPR036940 -
Seca3g01223 256 Pfam Actin-fragmin kinase, catalytic 111 249 IPR015275 -
Seca3g01223 256 SUPERFAMILY Aconitase iron-sulfur domain 14 104 IPR036008 -
Seca3g01223 256 Pfam Aconitase family (aconitate hydratase) 14 93 IPR001030 -
Seca3g01223 256 ProSitePatterns Aconitase family signature 2. 24 37 IPR018136 -
Seca3g01223 256 SUPERFAMILY Protein kinase-like (PK-like) 119 237 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01223 Seca-Chr3 21059293 21061403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01223 120 256 Protein tyrosine phosphatase (PTP) family AT5G23720 57.746 1.39e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01223 K14165 - gmx:100791993 202.986