Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01218 ATGTCTCTGAAGCGACCTGCCATGAACAGGAGTTTGAACAGAGATAATGCAGATATTTTGGTTGTGATGATTGCAGCGAAACAGATAATAAGATGTGGTGAGGAGGACAAAAGAGCTCAGGCTCAGAGAGAGAGAGGGACCAAGAGCCTTTTGGTGCATTTACTACTTGTGTCAATGGACAATGATATGTACATTTCTCCTCTGGACATTTCTGGCCGAGATTCTACTGTAGTAGATGAAATTTCACAACATTCCACCTCAAATCCACTCATTCAGTGCTATTCATTTGACCTTAATAACCAATCCCATCTCATAAATGGAATTCCAATGCTTGCTGGAGATCAAGGTGAACCTATAAGCAATGTCCAAGCTGATGTTTGCTTCACAAATCCTACAAGTATTGCTGACTCTAGTTCATTAGTTACATCACAAGGAAAGACAAGTGTGGAAGATGCCTCAAATTCCATGGAGAACAGTGAGTTTCAAGAGTATTTAGCTGGAGGAATGCCAATCACTCCTGCTTCACTTGCAGCCATTCTTGCTGCCAGAATTGGTCTTGAAGAAAATTTAGAGAATTCAGCAGCTTTGCCTCCTTCACTCTGCTCCATGGGGGCACTGGGGCCTTTCTTTAATAATTGGCAAGGCACATCAAACCCTTTATCTGTAACCTTTGAGGACCATAGTTACAATGAAGTACCTGGGAATGTCAACGAGTCTCCTAGAGCTCCAGAGCTTTATGAAACTGGGTGCCAACCTTATTCTTCCTTAGGAAACCTGGATTCAGATGGATGGACAGAACCAAATGTAGCAAACATGACCAATCATTCTTACCATTCTTCTAAATATAGTAATGAACTTTCTCTAAGTCTTGCAACATCTACAAGCCCAGGACAGTGTTCAGAGGTCAGTTGCTCTGATGTGACCCAATGCATGAATGGAACCATGTCAGGCTTGGAGCAAGCCTCTTGCAGCAGTACTAGGGAACTTTCTGAGTTTGGGATAAATTGTTCAGCTGCTGGCAATAGAAATAAATCAACTCCTGCTTTCCCACCCAAGAGAAGGATACTGGTAAATCACAATGCAGATCCTATGTATGAAGCTCATGCAGAATCTCAATTGCAAGGGCATGCAGCTGAATCAACGAAATCCCAACAACTGCTGACACTTCTACAACTGGTGGACAATCGATATAGCCAGTGTTTGGATGAGATACATACTGTTGTATCCGCATTCCATGCTGCTACAGAGCTGGATCCACAAATACATGCACAATTTGCTCTCCAAACAATTTCTGTTCTATACAAGGACTTGCGAGAGAGGATTAGCAATCATATCCTTGCCATAGGACCAAATTTTAACAACTTTTGCTCAGAAGAGCAAGAATGGTCTGTTGAAACATCATTCCTTCAAAAGCAATGGGCTTTCCAACAGTTGAAAAGAAAAGATCATCAATTATGGAGGCCCCAAAGAGGCTTACCCGAAAGATCCGTCTCAGTTTTAAGAACTTGGATGTTTCAGAATTTCCTTCATCCATATCCTAAAGATGCAGAGAAGCATTTGCTTGCAGTAAAAAGTGGGTTGACGAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGACTGTGGAAACCTATGATTGAGGAAATGTATAGTGAAATGAATAAAAGAAAGGCGTGTCGAAATGGAGAAGGAATGGAGAACAGCCACGGAAACAGCACTGCACTTGTAGAAATTGCCGTAAAGACAGGACTTATGAAATCTGCCGGTTAA 1776 0.4189 MSLKRPAMNRSLNRDNADILVVMIAAKQIIRCGEEDKRAQAQRERGTKSLLVHLLLVSMDNDMYISPLDISGRDSTVVDEISQHSTSNPLIQCYSFDLNNQSHLINGIPMLAGDQGEPISNVQADVCFTNPTSIADSSSLVTSQGKTSVEDASNSMENSEFQEYLAGGMPITPASLAAILAARIGLEENLENSAALPPSLCSMGALGPFFNNWQGTSNPLSVTFEDHSYNEVPGNVNESPRAPELYETGCQPYSSLGNLDSDGWTEPNVANMTNHSYHSSKYSNELSLSLATSTSPGQCSEVSCSDVTQCMNGTMSGLEQASCSSTRELSEFGINCSAAGNRNKSTPAFPPKRRILVNHNADPMYEAHAESQLQGHAAESTKSQQLLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDPQIHAQFALQTISVLYKDLRERISNHILAIGPNFNNFCSEEQEWSVETSFLQKQWAFQQLKRKDHQLWRPQRGLPERSVSVLRTWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYSEMNKRKACRNGEGMENSHGNSTALVEIAVKTGLMKSAG. 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01218 591 ProSiteProfiles 'Homeobox' domain profile. 483 546 IPR001356 GO:0003677
Seca3g01218 591 Gene3D - 489 568 - -
Seca3g01218 591 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 262 565 - -
Seca3g01218 591 SMART prehox3 312 443 IPR006563 -
Seca3g01218 591 Pfam Associated with HOX 347 442 IPR006563 -
Seca3g01218 591 CDD homeodomain 486 547 IPR001356 GO:0003677
Seca3g01218 591 Pfam Homeobox KN domain 503 542 IPR008422 GO:0003677|GO:0006355
Seca3g01218 591 SUPERFAMILY Homeodomain-like 488 555 IPR009057 -
Seca3g01218 591 SMART HOX_1 486 550 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01218 Seca-Chr3 20974015 20977674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01218 279 559 Homeobox Transcription Factor Family AT4G32980 51.282 5.46e-92 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca3g01218 POX 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01218 - - gmx:100820354 785.793