Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01214 ATGCTAAGGATATTCTTCCTCTTGTTGAGAATGGCCAGGAAATGCACATATTGTGGAAATTTGGGTCACAATTCAAGAACTTGCAACAACAACAACAATAGTAATAGTCTTGGTCACAGACAACAATTAAGGCTATTTGGAGTGCAACTTGATGTTTATTCTTCTTCAACCACTTCACCTTTTGCCACAAAAAGAAGAAGTTTCAGTTCAGATTACCTGCTATCTTCACAGACCTCTTTATCTGTACCTTCCTCCTCATCCTCTACCTCCTCACCTTCCATGCTTGGTGGTGCTGCTAATGAAAATTCAGATAGTTACTTAGCTAGAGCCAGCGCCCTCATTTCAACAATCCAAGATAGAAAAAAAGGTGTGCCATGGACAGAGGAAGAGCACCGGATATTTCTTAGAGGGCTTGAGAAGCTGGGAAAAGGTAACTGGCGAGAAATATCTAAAAAATATGTGACATCAAGAACACCAACCCAGGTGGCAAGTCATGCACAAAAATATTTTCTCCGTCAATCTCAGATTAGCTTCAATAGAAGAAAACGCCGTCCCAGTCTCCTCGATGTGGGAGATGAAAGTAGATCCACATTTTTTAAACCAAGTGAAGCTTTTGGTCTCCCATCAGGAATAACTAATTTGACTTCAAATGATATCAGCTCCATCAGCCAATTAAGTAATAGCAATCAAAGTTTCCTTTCTCAGTGGCTTTTGCACCCTCATTCAGTGCAGAAATGGCCTAATTGCACTCTTGAGAGTGCAGCCCCTGATTTAGAACTCAAACTTGCAACACCCACGCCATTGGAGCTAACTGGAGGCATGTTCTGA 828 0.4143 MLRIFFLLLRMARKCTYCGNLGHNSRTCNNNNNSNSLGHRQQLRLFGVQLDVYSSSTTSPFATKRRSFSSDYLLSSQTSLSVPSSSSSTSSPSMLGGAANENSDSYLARASALISTIQDRKKGVPWTEEEHRIFLRGLEKLGKGNWREISKKYVTSRTPTQVASHAQKYFLRQSQISFNRRKRRPSLLDVGDESRSTFFKPSEAFGLPSGITNLTSNDISSISQLSNSNQSFLSQWLLHPHSVQKWPNCTLESAAPDLELKLATPTPLELTGGMF. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01214 275 CDD SANT 125 170 IPR001005 -
Seca3g01214 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 174 IPR017930 -
Seca3g01214 275 NCBIfam myb-like DNA-binding domain, SHAQKYF class 121 173 IPR006447 GO:0003677
Seca3g01214 275 ProSiteProfiles Myb-like domain profile. 118 170 IPR001005 -
Seca3g01214 275 FunFam transcription factor MYB1R1 124 175 - -
Seca3g01214 275 MobiDBLite consensus disorder prediction 78 99 - -
Seca3g01214 275 Pfam Myb-like DNA-binding domain 125 170 IPR001005 -
Seca3g01214 275 SUPERFAMILY Homeodomain-like 119 175 IPR009057 -
Seca3g01214 275 Gene3D - 124 176 - -
Seca3g01214 275 SMART sant 122 172 IPR001005 -
Seca3g01214 275 PANTHER TRANSCRIPTION FACTOR KUA1 13 208 - -
Seca3g01214 275 ProSiteProfiles SANT domain profile. 126 174 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01214 Seca-Chr3 20788472 20789762 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g01214 Myb_DNA-binding 5.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01214 - - aprc:113866246 262.307