Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01206 ATGAAAGATTTGGGAGTAGTAGATGAAAATATGTCTAATTTGACATCTGCATCAAGTGCTTCTTCTCTCCATCCTCTGCACTCTTCCACTTCAACAATTCAGGAACCACAACCTAAAAAGAAGAGAAATCTTCGAGGACATCCAGACCCTGAGGCTGAAGTGATAGCCTTGTCTCCAAACACACTCTTGGCAACAAACCGGTTCATTTGTGATATTTGTAACAAAGGGTTTCAAAGAGATCAGAATCTGCAGCTTCATAGAAGAGGGCATAATTTACCATGGAAGCTGAAGCAGAAAAGTAACAAAGAGCCGAGAAAAAAGGTGTACGTGTGTCCAGAGCCAACGTGCGTTCACCATGATCCATCAAGGGCACTAGGAGACCTCACTGGAATCAAGAAGCACTTTTGCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGAAAAGTGCTCTAAGAAGTACGCAGTTCAATCCGATTGGAAAGCTCACTCCAAGATTTGTGGCACCAGAGAGTACAAATGTGACTGTGGAACCATTTTCTCTAGAAGGGACAGTTTCAGTGCTCATAGAGCCTTCTGTGATGCTTTAGCACAGGAGAGTACTAAAGCATTCACAGCAATGAATCCTTTACTATCATCTGATCACATACAACAAGTTCCATTAGTTAAAAAGGAACAAGAAATGAATTTAAGACCAGAAATTCCATCATGGTTGTCTTATCCACCACCATTACCGGTTGGAGAAGCTGGCCAATCAGAAAACCCTAACCCTACTATTTTGGGTCCTTGTAATTTTCAACCCATAGCTTCTCCTCATATGTCTTTGTTGCAAAAAGCATCGCAAATGCCGCATCACGTGCAAGGACAAGGATCCTATAGCTCCTCTTCAGTTGTTTCTGGATTATTGGACATGCCTTCGCGTGAAGAAATAGGGACAGTGCCACCATTTGGTCATCCTCATGTTTTGGCATCATTGTATGGGAATGGGATCATGTGTGAGTTATTGGAAGAAGGTGGTGGTACTAATACAGGAGGAGCTGAAGAAGCATCTTCTTCTCAGCTTATTCATGATATGATGGATGGTTTGGTCAATAATCCTTTTGAGGAGGCTGTAAGGGGAATGATGGATAATAATAATAATAACAACTTTGAGGAACAATGGAGAGTTTCAAAGTCATCAGCAGAAATATCCCATTTTGGTAAAAGCAATTACAATATTGGCGTTGGTGGGAGCGCCAAGGAGGAGACAAGAGATTTTCTGGGTCTTAGAGTATTTCCTCACTTTGTCAATATGTCCAGGTTTGATAATTTAGGTTCTTCTTCTTATGGCAAGCAAAATCAGAACCAACCACCTTGGCAAAGTTGA 1362 0.4156 MKDLGVVDENMSNLTSASSASSLHPLHSSTSTIQEPQPKKKRNLRGHPDPEAEVIALSPNTLLATNRFICDICNKGFQRDQNLQLHRRGHNLPWKLKQKSNKEPRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFSAHRAFCDALAQESTKAFTAMNPLLSSDHIQQVPLVKKEQEMNLRPEIPSWLSYPPPLPVGEAGQSENPNPTILGPCNFQPIASPHMSLLQKASQMPHHVQGQGSYSSSSVVSGLLDMPSREEIGTVPPFGHPHVLASLYGNGIMCELLEEGGGTNTGGAEEASSSQLIHDMMDGLVNNPFEEAVRGMMDNNNNNNFEEQWRVSKSSAEISHFGKSNYNIGVGGSAKEETRDFLGLRVFPHFVNMSRFDNLGSSSYGKQNQNQPPWQS. 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01206 453 Gene3D Classic Zinc Finger 122 202 - -
Seca3g01206 453 MobiDBLite consensus disorder prediction 1 47 - -
Seca3g01206 453 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Seca3g01206 453 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Seca3g01206 453 Pfam Zinc finger, C2H2 type 68 90 IPR013087 -
Seca3g01206 453 SMART c2h2final6 144 164 IPR013087 -
Seca3g01206 453 SMART c2h2final6 68 90 IPR013087 -
Seca3g01206 453 SMART c2h2final6 109 139 IPR013087 -
Seca3g01206 453 FunFam protein indeterminate-domain 12-like 47 115 - -
Seca3g01206 453 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Seca3g01206 453 MobiDBLite consensus disorder prediction 9 37 - -
Seca3g01206 453 Gene3D Classic Zinc Finger 47 115 - -
Seca3g01206 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Seca3g01206 453 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 437 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01206 Seca-Chr3 20605599 20608154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01206 13 202 IDZ Gene Family AT3G50700 77.320 1.74e-109 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g01206 zf-C2H2 0.012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01206 K25870 - vvi:100257789 435.261