Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01194 ATGTCATTGGTTTGTGATGTTATAGGAGAAGTTAGCAGTGAACTTGAGAAGAAGGAAGTTAGAGATAGAGTTGCATTCAAAACCAAGTCAGAGATTGAAATACTGGACGATGGGTTCAGGTGGAGGAAGTATGGAAAGAAGATGGTGAAAAACAGCCCCAATCCAAGGTATATATATGCTATGATCGATGTGGTGCTATGTTTGGTACTTTTTATTCTTTTTTTCTGTCTTTTCTTTTATGAATAA 246 0.3618 MSLVCDVIGEVSSELEKKEVRDRVAFKTKSEIEILDDGFRWRKYGKKMVKNSPNPRYIYAMIDVVLCLVLFILFFCLFFYE. 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01194 81 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 59 IPR044810 GO:0003700
Seca3g01194 81 Pfam WRKY DNA -binding domain 36 59 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g01194 81 SUPERFAMILY WRKY DNA-binding domain 28 59 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g01194 81 Gene3D WRKY domain 22 69 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g01194 81 ProSiteProfiles WRKY domain profile. 30 69 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g01194 81 SMART WRKY_cls 35 69 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01194 Seca-Chr3 20492937 20493182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01194 23 59 WRKY Transcription Factor Family AT5G26170 81.081 1.76e-18 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g01194 WRKY 4.9e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01194 - - gmx:100819462 92.0485