Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01188 ATGAAAACAAGAATAATAATAAGAAGAAAGAAACCAATAGTGATTCTTCTGAACCATTCCCAAAATACTCAAAGTCACAGCCACAACATGACCGAGGAAAATCGCTTGATCATAAAAACTGAAATCCATCTTCCTCAAACAATTTCCACATCAGAGACAAAATGCTTTTGCGGCATATGCTTTGATTTCAAAACAGAAGCTGGTATGTTCAGAAGAAGTAAATGTAACCACCCATTTTGTGTTGATTGCATATCCAAGCATGTGGCTACTCAAATACAACAAAATATTCTCAAAGTGAATTGTCCACATCCAAATTGTTCTATAAAATTGAATCCAGAATATTTGCAAGGCATTTTGCCTAAACAAGTTATTGATCGATGGGAATGTGCAAGAGTCGAGTCTTCTATTGCTTCCAGGGAAAAGATTTATTGCCCTTTTAAGAATTGCTCTGTTTTGTTGGTGAATGATGGGTCAGAAGTTGTCACCAGTTCTGAGTGTCCCTCCTGTCACAGGCTATTTTGTGCACAGTGTAAGGTCCCATGGCATGGAGGAATGAGTTGCAAGGAATTCAAAAGGAGTAAAAGTGAAAAGAAGTTGGAGAGTGAGCTTCTAGAGTTGGCCAAAAGTGAAATGTGGCAGAAATGTCCTAAATGCTCTGTCTTTATCCAAAGAAGTAGTGGATGTGAACACATTACCTGCAGATGTGGATGCAACTTCTGCTACAACTGTGGGAAGGATTGGAAGTATGGACATACATGCAAGAAATCTAAGCCCACTTAA 780 0.3846 MKTRIIIRRKKPIVILLNHSQNTQSHSHNMTEENRLIIKTEIHLPQTISTSETKCFCGICFDFKTEAGMFRRSKCNHPFCVDCISKHVATQIQQNILKVNCPHPNCSIKLNPEYLQGILPKQVIDRWECARVESSIASREKIYCPFKNCSVLLVNDGSEVVTSSECPSCHRLFCAQCKVPWHGGMSCKEFKRSKSEKKLESELLELAKSEMWQKCPKCSVFIQRSSGCEHITCRCGCNFCYNCGKDWKYGHTCKKSKPT. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01188 259 Gene3D - 184 258 - -
Seca3g01188 259 Pfam IBR domain, a half RING-finger domain 127 187 IPR002867 GO:0008270
Seca3g01188 259 Pfam IBR domain, a half RING-finger domain 206 253 IPR002867 GO:0008270
Seca3g01188 259 ProSiteProfiles TRIAD supradomain profile. 53 259 IPR044066 -
Seca3g01188 259 SUPERFAMILY RING/U-box 203 254 - -
Seca3g01188 259 CDD Rcat_RBR_unk 211 247 - -
Seca3g01188 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 137 IPR013083 -
Seca3g01188 259 SMART ibrneu5 193 253 IPR002867 GO:0008270
Seca3g01188 259 SMART ibrneu5 125 187 IPR002867 GO:0008270
Seca3g01188 259 CDD BRcat_RBR_unk 140 190 - -
Seca3g01188 259 SUPERFAMILY RING/U-box 139 193 - -
Seca3g01188 259 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 35 249 IPR031127 GO:0004842|GO:0016567
Seca3g01188 259 ProSiteProfiles Zinc finger RING-type profile. 57 102 IPR001841 -
Seca3g01188 259 ProSitePatterns Zinc finger RING-type signature. 75 84 IPR017907 -
Seca3g01188 259 SUPERFAMILY RING/U-box 54 134 - -
Seca3g01188 259 FunFam RBR-type E3 ubiquitin transferase 52 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01188 Seca-Chr3 20404251 20405137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01188 57 244 C3H Transcription Factor Family AT2G19610 31.188 1.18e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01188 K11975 - lang:109340029 285.804