Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01186 ATGAGTTTGAGCACAGCCGAGGATGATTCGGCTTCTGAAATTCACATCCCTGCAGAGATTGATTGGCACATGCTTGACAAGTCCAAGTTTTTCTTCCTTGGCGCCGCCTTATTCTCTGGTGTTTCAGCTGCTCTTTATCCCATGGTTGTGTTGAAGACTCGCCAACAGGTTTCTTCTGCACAGTTCTCTTGCCTCAACATGTCTTGTGCCATTCTCCGCTATGAAGGGTTCAGAGGGTTTTACAAAGGTTTTGGTACTTCCTTGATGGGAACCATCCCTGCTCGAGCACTTTACATGGGTAGCCTTGAAATCACCAAGAGTAATGTTGGCACTGCTTTTGTTGAATTGGGTTTCTCAGATACCACAGCCACTGCTGTTGCTAGTGCTGCAGCAGGTGTCACTTCTGCTATGGCTGCACAATTAGTTTGGACCCCAATTGATGTTGTGAGCCAAAGACTCATGGTTCAAGGCAGTGGTGGCAGCAAAACTATTCTAGCCAATCTTAACTCTGACAATTACAGGAATGGCCTTGATGCTTTCAGGAAAATTCTCTGTGCTGATGGACCAAGAGGGTTCTATAGAGGATTTGGGATTTCTATACTGACTTATGCACCATCTAATGCTGTTTGGTGGACTTCTTACTCTATGGTCCATAGGTTCATATGGGGTGCTTTTGGTTCCTATATGGGTAAGAGGGATGAGAGTGGTTTGGGGAATGGGTGTGGTTTTAGGCCTGATTCCAAGGCAATGGTGGCTGTTCAAGGGTTGAGTGCGGTTGTGGCTAGTGGGGTATCTGCAATTGTGACCATGCCTCTTGACACAATCAAGACAAGGTTGCAGGTGTTGGATACAGAAGAGAATGGGCGAAGGAGGCCGTTAACTTTTGTGCAGACGGTTAGGAATTTGGTGAAGGAAGGTGGCATGCTTGCTTGTTACAGAGGATTGGGGCCAAGATGGGCTTCAATGTCCATGTCTGCAACAACCATGATTACTACTTATGAGTTTCTGAAACGGATGTCTACTAAGAGCCAAGAGAAACTAAATTGA 1047 0.4604 MSLSTAEDDSASEIHIPAEIDWHMLDKSKFFFLGAALFSGVSAALYPMVVLKTRQQVSSAQFSCLNMSCAILRYEGFRGFYKGFGTSLMGTIPARALYMGSLEITKSNVGTAFVELGFSDTTATAVASAAAGVTSAMAAQLVWTPIDVVSQRLMVQGSGGSKTILANLNSDNYRNGLDAFRKILCADGPRGFYRGFGISILTYAPSNAVWWTSYSMVHRFIWGAFGSYMGKRDESGLGNGCGFRPDSKAMVAVQGLSAVVASGVSAIVTMPLDTIKTRLQVLDTEENGRRRPLTFVQTVRNLVKEGGMLACYRGLGPRWASMSMSATTMITTYEFLKRMSTKSQEKLN. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01186 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 339 IPR018108 -
Seca3g01186 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 220 IPR018108 -
Seca3g01186 348 SUPERFAMILY Mitochondrial carrier 23 336 IPR023395 -
Seca3g01186 348 Gene3D Mitochondrial carrier domain 29 347 IPR023395 -
Seca3g01186 348 PRINTS Mitochondrial carrier protein signature 193 211 IPR002067 GO:0055085
Seca3g01186 348 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Seca3g01186 348 PRINTS Mitochondrial carrier protein signature 258 280 IPR002067 GO:0055085
Seca3g01186 348 Pfam Mitochondrial carrier protein 39 108 IPR018108 -
Seca3g01186 348 Pfam Mitochondrial carrier protein 252 343 IPR018108 -
Seca3g01186 348 Pfam Mitochondrial carrier protein 124 222 IPR018108 -
Seca3g01186 348 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 345 - -
Seca3g01186 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01186 Seca-Chr3 20385683 20386729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01186 1 345 Chloroplast and Mitochondria Gene Families AT1G72820 66.379 1.96e-166 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01186 K15121 - gmx:100784202 570.852