Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01185 ATGAATACCACCAACACCAGAGCCGAAGCTGACAAGTTGCTTGAAATCGGCGAGCAACTTCTACAGAACCGCGATCTCAAAGCTTCCAGGGACTTAGCCATTCTAGCCCAAGAAACCGAACCTCTTCACGAAGGTTCTGACCAGCTCCTCGGCATCTTGGACGTCCTTGAAGCCTCAGAGAAATGCCTCAACAACAACACCCCTGACTGGTACGCTATTCTCCAGGTCGATCGCGCCACCAAAGACCTCAATCTCATCAAGAATCAGTACCGTAGGCTCGCCATTCTCCTTCAGCCTGATAAGAACTTCTTCTCCTTCGCTCACCAAGCCCTCAAGCTCGTTTCGGATGCATGGGCCGTCTTATCTGACCCAGTCCAAAAGGCCATCTACGATCAGGCTTTTGACCGGCCCGGAGGTGATAGCCCGTCTACTTTCTGGACTGCATGCCCCTATTGTTACCGGATGTATGAGTATCCTAGGGTTTACGAGGGTTGTTGTTTGAAGTGCCAGAATTGTGACAAATCGTTCCATGGACTCTCGATTCCTGCTATGCCGCAAATGGTTCCGGGGCAAGAAGCGTACTATTGTAACTGGGGATTCCTTCCGATGGGTTTTGTGTTCCAAAAGTTAGAGGATGGTGGGGAAACGGCGCCGGTGTCAGCTGTTCCCAATAATGGGGTTGCTTCTGCTCCGGCTCCGCCAAAGCGAGGAAGGCCACGAAAGCACTGGGAGGTCAATCTGCCTGCTGAGGAGGTGCCTCCTGAGCTTCCAGAGCCAACATCGGGCAACAACTTTGCCAGAGATGGAATGCAAGAAAAGGACTGGCTATCCTTAGTCACTGTGCACACTGCACAGATGCGACTATTTAATATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACAGGGATGGCCAAGAAACAAGCAAAGGAAAAGTCATCAGTTTCTAATCATAGCAGTAACAAATCCAAATCAAACTCTATGCAAGTTTGA 996 0.495 MNTTNTRAEADKLLEIGEQLLQNRDLKASRDLAILAQETEPLHEGSDQLLGILDVLEASEKCLNNNTPDWYAILQVDRATKDLNLIKNQYRRLAILLQPDKNFFSFAHQALKLVSDAWAVLSDPVQKAIYDQAFDRPGGDSPSTFWTACPYCYRMYEYPRVYEGCCLKCQNCDKSFHGLSIPAMPQMVPGQEAYYCNWGFLPMGFVFQKLEDGGETAPVSAVPNNGVASAPAPPKRGRPRKHWEVNLPAEEVPPELPEPTSGNNFARDGMQEKDWLSLVTVHTAQMRLFNMINDLPTIFEVVTGMAKKQAKEKSSVSNHSSNKSKSNSMQV. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01185 331 Gene3D DnaJ domain 56 140 IPR036869 -
Seca3g01185 331 Pfam Alfin 237 283 IPR021998 GO:0006355|GO:0042393
Seca3g01185 331 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 314 - -
Seca3g01185 331 MobiDBLite consensus disorder prediction 217 241 - -
Seca3g01185 331 SMART dnaj_3 68 126 IPR001623 -
Seca3g01185 331 MobiDBLite consensus disorder prediction 315 331 - -
Seca3g01185 331 Pfam DnaJ domain 69 131 IPR001623 -
Seca3g01185 331 SUPERFAMILY Chaperone J-domain 64 134 IPR036869 -
Seca3g01185 331 CDD DnaJ 69 123 IPR001623 -
Seca3g01185 331 ProSiteProfiles dnaJ domain profile. 69 134 IPR001623 -
Seca3g01185 331 MobiDBLite consensus disorder prediction 310 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01185 Seca-Chr3 20377171 20381068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01185 7 269 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 45.936 1.80e-77 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01185 - - gmx:100802055 316.235