Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01182 ATGGCGGATCCCAGGTTCGTTGTTCCATACAATGACCCATATGAATCTCCTTTTAGCCCAACCTTTTTCAATTTGGATAATCCCATTCCCACACTAGCCGATTTATCCAACAACAATGCACCCATTCCCACTCTCACTTCCCTGCCCCAACAAAATCATTTTGGACTTCAACAGGGACAGAGTAGTAATCTTCCTCCCTTTCCACCAGTTCAAGATCACTACATGCACGATAACAATAATGATAATAATTTTTCCTTTGGAGGAGGAGCAACGAACTTTGAAGCGGGTCCATCACAACTGCAAATGGATGCAAATGAGAACATGCAGGACTCACAGAATAATCAAAACCTTGTGTTCACACTTGATTATTGGCCCCCAACACCACTCCCATTCCTTTGCACTTGTTGTCAAGTTCTCAGAGAAATAATTCACACCAATGGTTTTTACATTGAAAAGCTTGAGATTCATGGAAGGCTTGGGATAATTACCCATGCAATTCACCATCCCAATATTAATGGGGATCCTTCAAACAACCCTCCATATCAAATGATTGATTTTTGCAAGAAAAACATTGAGGAAATCAGGCTTATTCTAGAGCAATACTGTGTGGAGCGTAATACAGGAGGGTGCTTTATGGTGCAAGATCCAATGTCTGCTTATTATGAGGCTCTCTGCACTGGACTGGATTGGACTGAAGATTTAAGTGACGATCTTGCTGATAACAATCAAAATAATTCAGATGGACAACAAGTTGATGGCAGGGAGCAAGAGGGTGACACTGGAACAACTCCTAGACCTTCCCTTGCAGAACAGAGAGAGAGAGCGGCAAAGATGACATTGAATGATCTGAGTGATTACTTTCATCTACCTATTGATAAAGCGTCAAAGCGAGTGAACTTATGCCCCACTGTTGTCAAGAAAGTTTGCCGTAAGGGAGGATTAGGACGATGGCCTTACAGAAAGGTGAAAAGCATTATGAAGCAGATTACAATACTGGGACGTGCATTAGAGTCAGGAGATGCAGGGGTAAGAAGAAGAGCTCAAGCTGAAATTAACAGACTTGAACAAGAAATGGTTCAAGCTTGTGGTGGAGTTGCCCCAACCGCACTACACTCTGTCCGCCGATGA 1128 0.4273 MADPRFVVPYNDPYESPFSPTFFNLDNPIPTLADLSNNNAPIPTLTSLPQQNHFGLQQGQSSNLPPFPPVQDHYMHDNNNDNNFSFGGGATNFEAGPSQLQMDANENMQDSQNNQNLVFTLDYWPPTPLPFLCTCCQVLREIIHTNGFYIEKLEIHGRLGIITHAIHHPNINGDPSNNPPYQMIDFCKKNIEEIRLILEQYCVERNTGGCFMVQDPMSAYYEALCTGLDWTEDLSDDLADNNQNNSDGQQVDGREQEGDTGTTPRPSLAEQRERAAKMTLNDLSDYFHLPIDKASKRVNLCPTVVKKVCRKGGLGRWPYRKVKSIMKQITILGRALESGDAGVRRRAQAEINRLEQEMVQACGGVAPTALHSVRR. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01182 375 ProSiteProfiles RWP-RK domain profile. 265 345 IPR003035 -
Seca3g01182 375 MobiDBLite consensus disorder prediction 237 267 - -
Seca3g01182 375 PANTHER PROTEIN RKD4 110 362 IPR044607 GO:0003700
Seca3g01182 375 MobiDBLite consensus disorder prediction 236 272 - -
Seca3g01182 375 Pfam RWP-RK domain 277 325 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01182 Seca-Chr3 20367294 20369601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01182 278 338 NLP Transcription Factor Family AT4G24020 40.984 2.21e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca3g01182 RWP-RK 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01182 - - lang:109354161 376.711