Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01177 ATGGCTAATCGTTATGATTTGATCAAAGATGTTAATGTTGTTTCTGATCACAAAATTTGGAGAATCAAAGTTAGGGTGATTCGGCTTTGGAGATCTACTAATTTTAGAGATTCCACCCATAAACCTATGATTGAAATGGTTGTATTGGATGAAGAGGGAAATCGTATCCAGTGCACTATGAAGAGCATTCATGTCTATATGTTTGAGGGTGTGGTTTTGGAAGGTAATGTTTACATGTTAGAAAACGTTTCTGTTGCACTAAATACTGCAAAGTTCAAACAAACAATGCATGAATTTAGACTGTATTTCAAGAGAGAAACACAAGTTCGTTTGATTGACGATTCCAACATTCCAATGAATAGGTTTTCATTTGTCCCATTTTCTGATATTTTGAATAATCATTTTTCCAATGCCTTTCTTCAGGACCACAATTGTCTAATATTTATTTATTTTCTAATTACGCCATGCATCGCACAGGTACAACACTAG 489 0.3415 MANRYDLIKDVNVVSDHKIWRIKVRVIRLWRSTNFRDSTHKPMIEMVVLDEEGNRIQCTMKSIHVYMFEGVVLEGNVYMLENVSVALNTAKFKQTMHEFRLYFKRETQVRLIDDSNIPMNRFSFVPFSDILNNHFSNAFLQDHNCLIFIYFLITPCIAQVQH. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01177 162 Pfam Domain of unknown function DUF223 45 137 IPR003871 -
Seca3g01177 162 SUPERFAMILY Nucleic acid-binding proteins 6 114 IPR012340 -
Seca3g01177 162 Gene3D - 7 115 IPR012340 -
Seca3g01177 162 CDD RPA1_DBD_A_like 21 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01177 Seca-Chr3 20267953 20268552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01177 20 130 Core DNA Replication Machinery Family AT5G08020 26.316 7.15e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01177 - - aip:110263782 164.466