Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01176 ATGAACTTGAGTAACAGCCCTCAGAAACTGTCTCGGCAGTCATCATCAGGGGCGAAGAAAGAGCCAATTAGCACTTTCCCGAGTGGATGCTGTCGAGGCTTCACCAGCGTTAGGACTGTGACATCAACCGCACAACACCATCACCGTTATGAAAAATTGGAAGCAAAGGTGGCAGATTTGGAAAAAGAGGTGGAAAAGCAAACAGAACTCAGAGTGATGTATAAGAAACGAATGGAAAGGACGCAAGACTACTTAAGGTACTGCCTCCAAATAGCACAGGAGAATGGAATCTTGGACCTCATTATCCGCTCCAAAGGTGAATTTCAACAATCTCCTTCTCCTCTCTCTTTCTACACTATCAACTCTATTACCACCACCAGCCCTCAGGTTCCCACTCCTGTGCACCACCACTCTAATCTAGCGGCCATCATTGATCAAGCCAAAATCAACGGCTGGTATATTAATCCAACCGAGATTGAATTGGAAGAGAAAATAGGGCAGGGAAGCACTGCAGACATTTACAGGGCTACATGGCGTGGATTTGATGTGGCAGTGAAGTGCATTTCTGCTGAATTCTTCCACACAAATGCAAACGGTGTTGAATTCTTTTGTCAGGAACTTGAAACTCTGTCAAAGCAACGACACCGTTTTGTGCTTCATTTGATGGGTGCGTGTCTTGACCCTCCTCATCATGCGTGGGTTGTTACTGAATATCTTAGCACCACGCTGAAGGAGTGGTTATATGGGCCTGGCAAAAGGCGCAAAGATAGAATCGTTCCACTTCCTCCTTTTAAAGACAGAGTAATGAGGGCCTTAGAGATAGCCCAAGCTATGCAGTATCTACATGAACAAAAGCCCAAAGTCATTCACCGTGACTTGAAGCCCAGCAACATTTTCTTGGACGATACCATGCATGTTAGAGTTGCTGATTTTGGACATGCCCGCTTCTTAACTGATGGGGAAATGGCTCTCACCGGAGAAACAGGCATGCTTACACAAATATGTGCATATTACTTTCTAGTTGTATTGATGATTGTGACCCACATTCATATTTGCGATAAATATACATTTTCAGGAACATATGTTTATATGGCACCGGAGGTGATCCGATGTGAGCCCTATAATGAAAAATGTGATGTTTACAGTTTCGGAATCATACTGAATGAGCTTCTCATTGGAAAATACCCCTATATCGAGACAGAATATGGTCCCGCCAAGATTGCTATGGAAGTTGTGGAGGGCAAGTTGCGGCCCATGCTTCCATCAAGGGATGATGGTGACCAAGTGGGAGAGCTGATTGACCTAATATGCCTTTGTTGGGATGGAAATCCATTCACTCGACCATCCTTTGCAACAATCAGTCGTATTCTTAAAAGCTATGCCAATAGGGTCTTTCAATGTTCAAACTAG 1410 0.4426 MNLSNSPQKLSRQSSSGAKKEPISTFPSGCCRGFTSVRTVTSTAQHHHRYEKLEAKVADLEKEVEKQTELRVMYKKRMERTQDYLRYCLQIAQENGILDLIIRSKGEFQQSPSPLSFYTINSITTTSPQVPTPVHHHSNLAAIIDQAKINGWYINPTEIELEEKIGQGSTADIYRATWRGFDVAVKCISAEFFHTNANGVEFFCQELETLSKQRHRFVLHLMGACLDPPHHAWVVTEYLSTTLKEWLYGPGKRRKDRIVPLPPFKDRVMRALEIAQAMQYLHEQKPKVIHRDLKPSNIFLDDTMHVRVADFGHARFLTDGEMALTGETGMLTQICAYYFLVVLMIVTHIHICDKYTFSGTYVYMAPEVIRCEPYNEKCDVYSFGIILNELLIGKYPYIETEYGPAKIAMEVVEGKLRPMLPSRDDGDQVGELIDLICLCWDGNPFTRPSFATISRILKSYANRVFQCSN. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01176 469 Coils Coil 43 77 - -
Seca3g01176 469 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 67 458 - -
Seca3g01176 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Seca3g01176 469 SMART serkin_6 159 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01176 469 ProSitePatterns Protein kinases ATP-binding region signature. 165 186 IPR017441 GO:0005524
Seca3g01176 469 Pfam Protein kinase domain 160 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01176 469 ProSiteProfiles Protein kinase domain profile. 159 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01176 469 MobiDBLite consensus disorder prediction 1 24 - -
Seca3g01176 469 SUPERFAMILY Protein kinase-like (PK-like) 138 455 IPR011009 -
Seca3g01176 469 Gene3D Transferase(Phosphotransferase) domain 1 240 466 - -
Seca3g01176 469 Gene3D Phosphorylase Kinase; domain 1 147 239 - -
Seca3g01176 469 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01176 Seca-Chr3 20225800 20227895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01176 120 458 MAP Kinase Kinase Kinase AT5G03730 33.431 6.58e-43 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Seca3g01176 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01176 - - gmx:100810435 687.952