Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01175 ATGGATGCTACTAAGCATCAAGGCGGCGAAGTAAGCATGACGGAGAATAAAAGAGAAGTGGTGGTGGCGATTCCAAATGCTGGTGGAGAGAGCCATGAGTTGAAAGGGGTTGAATCTTTAACCCCCAAACATAGCAGGGTGGATTCACCTCACACAATATCCTATGACAACGAGCTTTCTGCAGCATCAAAGTCACCACCTTTGAATTGTGCTTCCCCTGAGATAAGGTTCATTCCCACCAGCCCAAATAAGCCCCCTAAAGTTCCTACTGCCAACACCAACCTCACCCGAAGAAGATCACTTGCAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGTTGAACAACCTTATACTATTGATGGGGCCATTTTAGAAGAGAATAGTACTTCAACTTTGCAAGAACAAATGGCTGTTAGTTCACCATTTAGGAACTCTTTTAATAAAGCATCACCTAATAACAAATCCGGGACAGTTAATAGAACTGTTTCCATCACTTCTGTTATCACTCCCAAGACACCATTGATGGCATCTCCTGGGCCTGCTGGGGAGGAGGATCTGGATGAAATCATTTATAGGAAAGTTGAATTGAGTAAAGGCAAGAGTAAGAGACTGAAAGCTAAGGTTTTGATAGAATGGTTTGTGTTTGTGTGCATTGCGGGTAGCCTGCTGGCTAGCTTAACTGTTGAAAAATTGAAAAAGACTAAGATTTGGGGTTTGGGGTTTTGGAGGTGGTGTGTGCTTGTGCTGGTGACCTTTTGTGGTATGTTGGTTACCAAGTGGTTCATGCACATTATTGTTTTCTTGATTGAAATGAACTTCTTGTTGAGGAAAAAGGTGCTGTATTTTGTCCATGGACTGAAGAAATGTGTTCAGGTCTTCATTTGGGTTGGCTTGGTTCTTCTCACATGGGTGCTGTTGATTAATCGTGGGGTCCAGCGATCTGAGTTGGCCTCGAAAATTTTGAATGGGGTGACATGGACTCTTGTCTCCCTTCTCATTGGAGCATTCTTGTGGGTCATAAAGACATTGCTGCTAAAGATTTTGGCATCGAATTTTCATGTCAAATCTTTCTTTGATAGAATTCAAGAATCAATCTTCCATCAGTATGTTCTGCAGACTCTCTCTGGGCCTCCACTTATGGAAGAGGCTGAGAAGGTCGGCGGATCGCAGAGTATTGGTCATTTTAGTTTCAGGAGTACGACTGGTAAAGGTGGCACAAAGAAAGAGGTTATTGATATGGCAAAGCTTCACAAGATGAAGCAAGAGAAAGTTTCTGCATGGACTATGAAGATGTTGGTAGATGCAGTGACAAATTCAAGGCTGTCCACAATCTCTAATTCACTAGATGAAAGTTTTTATGATGGAGAAAATGAACAAACTGATAAAGAGATTACAAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTTAGAAATGTTGCTGCCCCTGGTTGCACGTACATTGACGAGGATGAACTCCGGAGGTTCATGATTAAGGAAGAAGTGCGTGTGGTATTTCCCCTCCTTGCCCAACCAGATACAGGGCAAATTACCAGAAAGTCATTGACAGACTGGTTGTTGAAGGTATATCAAGAACGTAAAGCATTGGCACATGCCTTAAGTGACACCAAAACAGCTGTAAAACAATTAAACAAGCTGGTGACTGTGGTCCTACTAGTGGTGACCATAATAGTGTGGCTTCTACTGATGGAGATTGCAACTACAAAAGTACTTTTATTCTTCTCATCACAGCTATTAGTTGCAGCTTTCATGTTTGGAAACACATGCAAGAATATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCGTTTGATGTTGGTGATCGATGTGTTGTAGATGGTGTTCAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGGCTAATAATGAAAAGGTGTACTTTCCAAACTCTGTCCTGGCCACAAAACCGATTAGCAATTATTACAGAAGCCCAGATATGGGTGACGGTGTAGAGTTCGCGATTGATTTTATGACACCAGCAGAGAAGATCGGGGCACTGAAAGAAAAAATAAAGAGGTACCTGGAGAGAAATCCACAATACTGGCATCCAAATCACAACTTAGTAGTACAGGAGATAGAAAATGTAAATAAGATTAAGATGGCTCTCTTTGTTACCCACACAATGAACTTTCAAGAATTTGGGGAGAAGAACAAGCGGAGAAGTGAACTGGTGATGGAAATAAAGAAAATATTTGAAGAGCTCAATATCAGATACAACCTCCTTCCACAAGATGTTCATCTCAGACATATGGAGCCAGATACCAATGTAATCCATAGATGA 2346 0.4122 MDATKHQGGEVSMTENKREVVVAIPNAGGESHELKGVESLTPKHSRVDSPHTISYDNELSAASKSPPLNCASPEIRFIPTSPNKPPKVPTANTNLTRRRSLARSVYSKPKSRFVEQPYTIDGAILEENSTSTLQEQMAVSSPFRNSFNKASPNNKSGTVNRTVSITSVITPKTPLMASPGPAGEEDLDEIIYRKVELSKGKSKRLKAKVLIEWFVFVCIAGSLLASLTVEKLKKTKIWGLGFWRWCVLVLVTFCGMLVTKWFMHIIVFLIEMNFLLRKKVLYFVHGLKKCVQVFIWVGLVLLTWVLLINRGVQRSELASKILNGVTWTLVSLLIGAFLWVIKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLMEEAEKVGGSQSIGHFSFRSTTGKGGTKKEVIDMAKLHKMKQEKVSAWTMKMLVDAVTNSRLSTISNSLDESFYDGENEQTDKEITNEMEATAAAYYIFRNVAAPGCTYIDEDELRRFMIKEEVRVVFPLLAQPDTGQITRKSLTDWLLKVYQERKALAHALSDTKTAVKQLNKLVTVVLLVVTIIVWLLLMEIATTKVLLFFSSQLLVAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKANNEKVYFPNSVLATKPISNYYRSPDMGDGVEFAIDFMTPAEKIGALKEKIKRYLERNPQYWHPNHNLVVQEIENVNKIKMALFVTHTMNFQEFGEKNKRRSELVMEIKKIFEELNIRYNLLPQDVHLRHMEPDTNVIHR. 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01175 781 SUPERFAMILY Sm-like ribonucleoproteins 603 662 IPR010920 -
Seca3g01175 781 Pfam Mechanosensitive ion channel 553 759 IPR006685 GO:0016020|GO:0055085
Seca3g01175 781 PIRSF Memb_At2g17000 4 781 IPR016688 -
Seca3g01175 781 FunFam Predicted mechanosensitive ion channel 613 662 - -
Seca3g01175 781 MobiDBLite consensus disorder prediction 25 49 - -
Seca3g01175 781 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 58 777 IPR016688 -
Seca3g01175 781 Gene3D - 613 662 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01175 Seca-Chr3 20203772 20207162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01175 63 769 Mechanosensitive Ion Channel Family AT5G12080 60.704 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01175 K22048 - gmx:100803107 1214.91