Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01165 ATGGCTACTCATCTGCTCAGGCTTTCTCTCTCCCCACAACCTAAGCTCTGCTTCAATTACACACCCAACCATGACATCCGCTTCATTTCTCTGCTCCCGGCAAAACGACGTCGCAACCGCCACCGCCGGGGTATTCTCCGGCCACATTTCGTCGTATCAAACTCCTTTGGTACTAAAATTGGCTCGCCGGAATCAGCTGTTCTTCGAGGCCAGGCACAGAGCAAAGACTCGCCAGTTCTACTCGACGTTACCGGGATGATGTGTGGCGCGTGCGTCTCCCGAGTCAAAAACATCTTGTCCGCCGATGACCGAGTCGACTCGGTCGTGGTCAACATGCTGACCGAGACCGCCGCCGTTAAGTTGAAACAGATGGAGGAGGAACCGACGAGTGTTGCGGAGAGCCTTGCTCGGAGATTGAGCGATTGCGGGTTTCCGACGAAGCGGAGAGCCTCGGGTTCGGGAGTGGCGGAAAATGTGAGGAAGTGGAAGGAGTTGGTGAAGAAGAAGGAGGAACTGGTCGCCAAGAGTCGAAGCCGCGTCGCTTTCGCTTGGACTCTGGTGGCATTGTGCTGTGGATCGCATGCTTCGCATATTTTTCATTCTTTGGGAATTCACATTGCTCATGGATCGTTTTGGGAAATTCTTCATAATTCATATGTGAAAGGTGGTTTAGCTTTGGGCTCTCTATTGGGACCAGGACGAGAGTTACTCTTTGATGGCCTAAACGCGTTTAAGAAGCGGTCTCCAAATATGAACTCCCTCGTGGGATTTGGTTGTATAGCTGCTTTCATCATCAGTTCGATCTCACTACTTAACCCCGAGCTGGCATGGGATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTAGGACGTTCTCTGGAGGAAAAGGCTAGGATTCAGGCATCTAGTGATATGAATGAACTTCTTGTAAGTTGCAATGCAGTTCATCTCTTTCGTCTGTCACTGATATCTACTCAGTCAAGACTTGTGATTACTTCATCAGAAGGTTCACCATCTACTGACAGTGTGCTTGGTGCTGACGCACTTTGTGTTGAAGTCCCAACTGATGATATTCGAGTAGGTGACTCAGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAAGGTCATCTCGGGAAGAAGCGTTGTGGATGAATCGATGCTTACAGGAGAATCACTTCCTGTATTTAAGGAGGAAGGTCTTACAGTTTCAGCGGGAACTATAAATTGGGATGGCCCTTTAAGGATTGAAGCTTCTTCAACTGGCTCCAACACAATGATAGCCAAGATTGTTCGCATGGTTGAGGAAGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCGGATTCGATAGCAGGGCCATTTGTATACACTGTAATGACTCTGTCAGCAGCAACATTTGCATTTTGGTATTTTATTGGATCACACATATTTCCTGATGTTTTGCTTAATGACATTGCGGGCCCAGAAGGAGATCCTTTACTTTTGAGTTTAAAACTCTCTGTAGATGTTTTGGTTGTTTCTTGTCCTTGTGCACTGGGTCTTGCCACACCAACAGCAATACTGGTTGGCACCTCACTTGGGGCAAGAAAAGGGCTTCTTATTAGAGGAGGAGATGTGCTGGAACGCTTGGCCAATGTAAAGTATATTGCTTTAGACAAGACAGGAACTCTCACCAGAGGGAAACCAGTTGTGTCTGCCATAAGTTCTATTCATTATGGAGAGTCAGAAATTCTTCAGATTGCTGCTGCAGTGGAGAAAACTGCTTCTCATCCAATTGCAAAGGCTATTGTCAATAAAGCTGAGTCTTTAGAGTTGGTCCTTCCAGTCACAAAAGGACAGTTAGTTGAACCAGGGTTTGGAACCTTAGCAGAAATAGACGGGCGTTTGATTGCAGTGGGGTCTTTAGAATGGGTCCATGAACGCTTCCACACTAGAATAAACCCATCCGATTTGATGAATCTGGAACAGACTTTGATAAATCATTCATCAAATACAACATCTTCAAAGTATTCAAAAACTGTTGTCTACGTTGGACGTGGAGGAGAAGGCATCATTGGCGCTATTGCCTTATCTGACATTGTACGTGAAGATGCTGAATCTACTGTAATGAGGCTCAAGCAGAAGGGGATTAAAATGGCCCTCATATCAGGAGACAGGGAAGAAGCAGTTGCAACAATAGCAGAGACAGTTGGAATTGAAAATGATTTTGTCAAAGCATCTCTGTCTCCACAGCAGAAATCTGGATTTATTTCATCTCTGAAAGCTGCTGGACATCATGTTGCGATGGTAGGTGATGGGATAAATGATGCACCTTCTTTGGCTGTAGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCAGATGCAGCATCCATTATACTGCTGGGGAACAAAATTTCACAAGTTGTCGATGCACTAGACCTAGCACAGGCAACAATGGCGAAAGTGTACCAAAACTTGTCTTGGGCAGTAGCCTACAATGTTGTTGCCATTCCCGTTGCTGCCGGTATGTTACTTCCCCAGTTTGACCTTGCCATGACACCTTCACTTTCAGGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTAGCAACTCACTGCTTCTACAGCTTCATGGGTCTCAGACCTCCAGTAAGGGCTCACTCTAG 2688 0.465 MATHLLRLSLSPQPKLCFNYTPNHDIRFISLLPAKRRRNRHRRGILRPHFVVSNSFGTKIGSPESAVLRGQAQSKDSPVLLDVTGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVKLKQMEEEPTSVAESLARRLSDCGFPTKRRASGSGVAENVRKWKELVKKKEELVAKSRSRVAFAWTLVALCCGSHASHIFHSLGIHIAHGSFWEILHNSYVKGGLALGSLLGPGRELLFDGLNAFKKRSPNMNSLVGFGCIAAFIISSISLLNPELAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLVSCNAVHLFRLSLISTQSRLVITSSEGSPSTDSVLGADALCVEVPTDDIRVGDSVLVLPGETIPIDGKVISGRSVVDESMLTGESLPVFKEEGLTVSAGTINWDGPLRIEASSTGSNTMIAKIVRMVEEAQSREAPVQRLADSIAGPFVYTVMTLSAATFAFWYFIGSHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLANVKYIALDKTGTLTRGKPVVSAISSIHYGESEILQIAAAVEKTASHPIAKAIVNKAESLELVLPVTKGQLVEPGFGTLAEIDGRLIAVGSLEWVHERFHTRINPSDLMNLEQTLINHSSNTTSSKYSKTVVYVGRGGEGIIGAIALSDIVREDAESTVMRLKQKGIKMALISGDREEAVATIAETVGIENDFVKASLSPQQKSGFISSLKAAGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQATMAKVYQNLSWAVAYNVVAIPVAAGMLLPQFDLAMTPSLSGGLMALSSIFVVSNSLLLQLHGSQTSSKGSL. 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01165 895 ProSiteProfiles Heavy-metal-associated domain profile. 77 147 IPR006121 GO:0046872
Seca3g01165 895 Pfam Heavy-metal-associated domain 81 144 IPR006121 GO:0046872
Seca3g01165 895 SUPERFAMILY HAD-like 556 879 IPR036412 -
Seca3g01165 895 Gene3D - 70 150 - -
Seca3g01165 895 NCBIfam heavy metal translocating P-type ATPase 251 882 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca3g01165 895 Gene3D - 324 445 - -
Seca3g01165 895 SFLD p-type atpase 541 824 IPR044492 -
Seca3g01165 895 Gene3D - 549 822 IPR023214 -
Seca3g01165 895 SUPERFAMILY Calcium ATPase, transmembrane domain M 442 552 IPR023298 -
Seca3g01165 895 PRINTS P-type cation-transporting ATPase superfamily signature 558 572 - -
Seca3g01165 895 PRINTS P-type cation-transporting ATPase superfamily signature 771 790 - -
Seca3g01165 895 PRINTS P-type cation-transporting ATPase superfamily signature 716 726 - -
Seca3g01165 895 PRINTS P-type cation-transporting ATPase superfamily signature 391 405 - -
Seca3g01165 895 PRINTS P-type cation-transporting ATPase superfamily signature 694 705 - -
Seca3g01165 895 NCBIfam HAD-IC family P-type ATPase 355 859 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g01165 895 SUPERFAMILY Calcium ATPase, transduction domain A 353 441 IPR008250 -
Seca3g01165 895 PANTHER ATP7, ISOFORM B 72 884 - -
Seca3g01165 895 Gene3D - 569 702 IPR023299 GO:0000166
Seca3g01165 895 FunFam Copper-transporting ATPase 1, putative 319 445 - -
Seca3g01165 895 FunFam Copper-transporting ATPase PAA2, chloroplastic 569 702 - -
Seca3g01165 895 Pfam haloacid dehalogenase-like hydrolase 554 785 - -
Seca3g01165 895 Pfam E1-E2 ATPase 348 538 - -
Seca3g01165 895 CDD HMA 81 145 IPR006121 GO:0046872
Seca3g01165 895 ProSitePatterns E1-E2 ATPases phosphorylation site. 560 566 IPR018303 -
Seca3g01165 895 SFLD Haloacid Dehalogenase 541 824 - -
Seca3g01165 895 SUPERFAMILY HMA, heavy metal-associated domain 78 145 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01165 Seca-Chr3 20115253 20126167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01165 242 883 Primary Pumps ATPases AT1G63440 36.600 7.57e-110 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01165 K17686 - gmx:100127402 1451.42