Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01163 ATGGCATTTCGGTTTGAACTTCTCCTTCTGGTTTCTCTCGTTTCTTTGAATTCAATCAATTCGGTGGATTCAAACGATGGAGCAATATTGTTGGAGATAAAGAAGTCATTGAGGGATGTGGATAATGTTCTATATGACTGGACAAACTCACCATCATCGGATTATTGTGTCTGGAGAGGGGTCACATGTGATAATGTCACCTTCAATGTCATTGCACTCAATCTTTCAGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAGCCTTAACAGCTTGGTCTCTATTGATTTCAAGGAAAACAGTCTGTCTGGTCAGATACCAGATGAGATTGGTGCTTGTTCTTCTTTGAAAAGCCTGGATTTGTCATTTAATGAGATTCGGGGAGATGTACCATTTTCAATTTCCAAGTTGAAACAACTGGAAAATCTGATTTTGAAAAATAACCAGCTAATTGGACCAATTCCTTCAACTCTGTCTCAGATTCCTAATTTGAAGATTCTAGACTTGGCACAAAATAATCTCAGCGGGGAGATACCAAGGCTTATATACTGGAATGAAGTTTTGCAATATCTTGGCTTGCGAGGTAACAATTTGGAGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTACTTTGATGTGAGAAACAATAGCTTGACTGGCAGTATTCCTGAAAACATAGGCAACTGTACTGCCTTCCAGGTCTTGGATTTATCGTACAACCAACTAACTGGAGAGATACCATTCAATATTGGATTTTTGCAAGTAGCGACCCTGTCATTGCAAGGCAATAAACTCTCAGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCACTCGCTGTCTTAGATTTGAGTTGCAACATGTTAACTGGACCAATCCCTCCTGTCTTGGGAAATTTGACCTACACAGAAAAATTGTATTTGCATGGAAACAAACTGACTGGCCTGATCCCCCCGGAGCTAGGAAATATGACAAAGCTTCACTATTTGGAATTGAATGACAACCATTTAAGTGGACATATCCCACCTGAGCTTGGAAAGCTTTCTGATCTGTTTGACTTAAATGTTGCTAACAACAACCTTGAGGGTCCAATTCCTGATAATATTAGCTCGTGTAAAAATCTTAACAGCCTCAATGTGCATGGGAATAAGTTGAGTGGAACAATCCCCTCAGCTTTTCAAAGCTTGGAGAGTATGACCTATTTGAATCTTTCTTCCAACAATCTTCAAGGCCCCATTCCAATTGAACTGTCACGGATTGGTAATTTGGATACCTTAGATATTTCAAATAATAATATAAGCGGTTCCATTCCTTCTTCCCTTGGTGACTTAGAACATCTTCTAAAGCTGAATCTAAGCAGAAATCATATAACTGGGTTTATTCCAGCAGAATTTGGTAATCTAAGAAGTGTCATGGATATTGATCTTTCAAATAATCAACTTTCTGGCTTGATTCCTGGAGAACTTAGTCAGCTTCAGAACATGATATCCTTGAGACTTGAAAACAACAGATTATCTGGGGAGGTGACATCACTTGTGAATTGCCTTAGTCTTTCTTTGCTCAATGTCTCCTATAACAACCTAGTTGGTATTGTTCCCACAAGCAACAATTTTTCCAGGTTTTCCCCTGACAGTTTTATTGGAAACCCTGCTCTTTGTGGCTATTGGCTGAATTCGCCTTGTAATGGGTCTCATGCTCCCGTACGAGTTACATTGCCTAAGGCAGCTATTCTAGGAATTGCTCTTGCTGCCCTCGTGATTCTTCTTATGATATTGCTGGCAGCTTGCCGACCACACAATCCTGCTCCTTTTCCTGATGGATCATTTGACAAGCCAGTTAATTATTCACCTCCAAAGCTAGTGATTCTTCACATGAATATGGCACTTCATGTGTATGATGATATCATGAGGATGACTGAAAACCTGAGTGAGAAATACATGATTGGATATGGTGCTTCAAGTACAGTTTATAAATGTGTACTTAAGAATTGCAAGCCAGTGGCTATCAAGAAGCTTTATTCTCACTATCCACAATACTTGAAAGAATTTGAGACTGAGCTTGAGACAGTTGGCAGCATTAAGCACCGGAATCTGGTCAGTCTCCAAGGCTACTCTCTGTCTCCATTTGGAAACCTTCTCATCTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGGATCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGGCTAAAAATAGCACTTGGAGCAGCCCAAGGGCTTGCATATCTACACCATGATTGCAGTCCTCGTATCATTCACAGGGACGTGAAATCATCTAACATTTTACTAGACAAAGACTTTGAGCCCCATCTCACCGATTTTGGCATTGCCAAAAGTCTATGCCCCTCTAAGTCCCACACTTCAACTTACATAATGGGCACAATTGGCTATATAGACCCTGAGTATGCTAGAACTTCCCGGCTCACTGAGAAGTCTGATGTGTATAGCTATGGTATCGTATTACTTGAGCTGCTAACTGGGAGGAAAGCTGTTGACAACGAATCAAACCTTCATCATCTGATTCTGTCCAAGACAGCTAACGATGCCGTGATGGAAACAGTTGATCCGGATATTATTGCCACATGCAAGGACATGGGAGCAGTAAAAAAGGTTTTTCAGCTTGCCCTTTTATGCACAAAGAGGCAGCCAGCTGATAGGCCTACAATGCATGAAGTGTCACGCGTGCTGGGAAGTCTTGTGCCATCCATCACTCCAACACAAGTACTGCTGCCTGATTCACAGCCATCTGCTACTAAGGTACAATGCTACAAGGATGAGTATGCAAATCTCAAAACTCCACACTTGGTGAACTTCCCAACCATGAGCACCTCTGATGCTCAACTCTTCCTCAAGTTTGGAGAGGTAATCTCTCAAAACAGTAGTGACTGCAGAATTTGA 2952 0.4136 MAFRFELLLLVSLVSLNSINSVDSNDGAILLEIKKSLRDVDNVLYDWTNSPSSDYCVWRGVTCDNVTFNVIALNLSGLNLEGEISPAIGSLNSLVSIDFKENSLSGQIPDEIGACSSLKSLDLSFNEIRGDVPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLEGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTAFQVLDLSYNQLTGEIPFNIGFLQVATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNMLTGPIPPVLGNLTYTEKLYLHGNKLTGLIPPELGNMTKLHYLELNDNHLSGHIPPELGKLSDLFDLNVANNNLEGPIPDNISSCKNLNSLNVHGNKLSGTIPSAFQSLESMTYLNLSSNNLQGPIPIELSRIGNLDTLDISNNNISGSIPSSLGDLEHLLKLNLSRNHITGFIPAEFGNLRSVMDIDLSNNQLSGLIPGELSQLQNMISLRLENNRLSGEVTSLVNCLSLSLLNVSYNNLVGIVPTSNNFSRFSPDSFIGNPALCGYWLNSPCNGSHAPVRVTLPKAAILGIALAALVILLMILLAACRPHNPAPFPDGSFDKPVNYSPPKLVILHMNMALHVYDDIMRMTENLSEKYMIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQYLKEFETELETVGSIKHRNLVSLQGYSLSPFGNLLIYDYMENGSLWDLLHGSTKKKKLDWDLRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTANDAVMETVDPDIIATCKDMGAVKKVFQLALLCTKRQPADRPTMHEVSRVLGSLVPSITPTQVLLPDSQPSATKVQCYKDEYANLKTPHLVNFPTMSTSDAQLFLKFGEVISQNSSDCRI. 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01163 983 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 298 570 - -
Seca3g01163 983 ProSiteProfiles Leucine-rich repeat profile. 428 451 IPR001611 GO:0005515
Seca3g01163 983 SMART serkin_6 648 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01163 983 ProSitePatterns Protein kinases ATP-binding region signature. 654 677 IPR017441 GO:0005524
Seca3g01163 983 SUPERFAMILY L domain-like 260 547 - -
Seca3g01163 983 Pfam Leucine rich repeat 359 415 IPR001611 GO:0005515
Seca3g01163 983 Pfam Leucine rich repeat 428 487 IPR001611 GO:0005515
Seca3g01163 983 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 619 723 - -
Seca3g01163 983 Gene3D Transferase(Phosphotransferase) domain 1 724 924 - -
Seca3g01163 983 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 188 297 - -
Seca3g01163 983 Gene3D Phosphorylase Kinase; domain 1 622 723 - -
Seca3g01163 983 Pfam Leucine Rich repeat 115 130 IPR001611 GO:0005515
Seca3g01163 983 Gene3D Ribonuclease Inhibitor 23 186 IPR032675 -
Seca3g01163 983 ProSiteProfiles Protein kinase domain profile. 648 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01163 983 Gene3D Ribonuclease Inhibitor 346 443 IPR032675 -
Seca3g01163 983 Gene3D Ribonuclease Inhibitor 260 345 IPR032675 -
Seca3g01163 983 Gene3D Ribonuclease Inhibitor 444 569 IPR032675 -
Seca3g01163 983 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 23 187 - -
Seca3g01163 983 SUPERFAMILY L domain-like 50 306 - -
Seca3g01163 983 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Seca3g01163 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672|GO:0006468
Seca3g01163 983 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Seca3g01163 983 CDD STKc_IRAK 654 917 - -
Seca3g01163 983 Gene3D Ribonuclease Inhibitor 187 259 IPR032675 -
Seca3g01163 983 SUPERFAMILY Protein kinase-like (PK-like) 625 913 IPR011009 -
Seca3g01163 983 SMART LRR_typ_2 91 115 IPR003591 -
Seca3g01163 983 SMART LRR_typ_2 450 473 IPR003591 -
Seca3g01163 983 SMART LRR_typ_2 282 306 IPR003591 -
Seca3g01163 983 SMART LRR_typ_2 211 235 IPR003591 -
Seca3g01163 983 SMART LRR_typ_2 163 187 IPR003591 -
Seca3g01163 983 SMART LRR_typ_2 474 497 IPR003591 -
Seca3g01163 983 SMART LRR_typ_2 402 426 IPR003591 -
Seca3g01163 983 SMART LRR_typ_2 330 354 IPR003591 -
Seca3g01163 983 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 724 925 - -
Seca3g01163 983 Pfam Protein kinase domain 651 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01163 983 PANTHER LEUCINE RICH REPEAT KINASE 2 377 918 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01163 Seca-Chr3 20077421 20095112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01163 93 978 Receptor kinase-like Gene Family AT5G07180 65.727 0.0 1145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Seca3g01163 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01163 K20718 - gmx:100804875 1717.98