Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01162 ATGCCCGAACCTGCCATGAATCTGCGCAAGGGCTCTAAGGTTTGGGTCCATGACAAAGATTGGGCTTGGTTGCCAGCAGAAGTACTCGAATATGCCGGTAAGCAAGTTCGCCTTGCAACCTCCTCCGGCAAGAAGGTTCTTGCTCTTCCGGAGAAACTGTTTCTGAGGGATGCGGATGAAGACGAGCATGGAGGAGTGGAAGATATGACGAGGTTGGCTTACTTGAATGAACCAGGGGTGTTGTACAATCTTCGGAGAAGATATGCGCTGAATGATATTTATACATATACAGGGAGCATTTTAATAGCTGTTAATCCATTCACAAAGCTTCCTCATTTGTACGATATCCATATGATGGAGCAGTATAAGGGAGCTCCGTTTGGTGAGCTTAGTCCACATGTATTTGCTGTTGCTGATGCATCTTATAGAGCAATGATGAATGAAGGTCAAAGCCAATCTATCTTGGTCAGTGGTGAAAGTGGTGCAGGGAAAACAGAGACAACAAAATTGATTATGCAGTATCTTACCTTTGTTGGTGGGCGTGCTGCTGGTGATGATAGAACAGTTGAACAACAAGTTCTTGAATCAAATCCACTTTTAGAGGCATTTGGCAATGCAAGGACCATCAGGAATGATAATTCAAGTCGTTTTGGGAAGTTTGTTGAAATTCAGTTTGATTCAAGTGGTAGAATATCTGGTGCTGCAATTAGAACTTACTTACTAGAAAGATCACGAGTAGTGCAGACAACAGATCCGGAAAGAAATTATCACTGCTTTTATCAGTTGTGTGCATCTGAAAGGGATGTAGAAAAGTATAAGTTAGGACATCCGAGCCAATTCCACTATTTAAATCAAAGTAAAGTTTATGAATTAGATGGGGTAAGCAGTGCAGAAGAATACATGAAGACAAGGAGAGCAATGGATATTGTTGGCATAAGTCATGAGGATCAGGAAGCCATATTTTGCACCTTAGCTGCAATTTTACATCTGGGGAACATTGAATTTTCTCCTGGGAAAGAGCATGACTCATCAGTAATAAAGGATGAAAAGTCAAGATTTCATTTGCAGATGGCTGCTAATCTATTCAAGTGTGATTTGAACCTACTGTTAGCAACATTATGTACCCGTTCAATACAAACCCGGGAAGGAAATATTGTCAAAGCTCTTGATTGTAATGCTGCTGTTGCTGGCCGGGATGCTTTGGCAAAAACTGTCTATGCTCGTTTGTTTGATTGGCTTGTTGATAAGATCAATTGGTCTGTTGGGCAAGATATCAATTCCCAGGTGCAAATTGGAGTTTTGGATATATATGGTTTCGAGTGCTTTAAGGATAATAGTTTTGAGCAATTCTGCATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTATTCAAGATGGAGCAAGAGGAATATAGCAAAGAAGAAATTAACTGGAGTTACATTGAATTTATAGACAACCAAGATGTTTTGGATTTGATTGAAAAGAAACCCATTGGTATCATTGCTCTGTTAGATGAAGCTTGCATGTTTCCAAAATCGACGCACGAAACATTCTCAACCAAGTTGTTTCAGCACTTCTTGTCACACCCTAGGTTAGAAAAGGAGAAATTCTCAGAGACAGATTTTACTGTTTCTCATTATGCTGGAAAGGTCACTTACCATACAGACACCTTCTTAGACAAAAATCGTGATTATGTCGTTCTAGAACATTGTAATCTATTATCTTCTTCGAAATGCGCCTTTGTGTCGGGTCTTTTTCCTTTGTTACCAGAGGAATCTTCAAGGTCATCATACAAGTTTTCTTCTGTGGCTTCCAGATTTAAGCAACAACTTCAAGCACTCATGGAAACACTTAACACAACAGAGCCTCATTACATTCGATGTGTCAAGCCAAATTCTTTGAATCTACCACAAAAGTTTGAGAATACAAGTGTCATACATCAATTACGATGTGGGGGTGTCCTTGAGGCTGTTCGGATAAGTCTGGCAGGTTACCCCACTCGAAGGACTTACTCAGAGTTTGTAGATCGCTTTGGATTAATAGCTCCTGAATTTATGGATGGAAGTTATGATGACAGAGCTGCAACTCAGAAAATATTGGAAAAGCTAAAGCTGGAAAATTTTCAGTTGGGTAGGACTAAAGTGTTTCTGAGGGCTGGTCAAATTGGCATTTTAGACTCCAGGCGTGCGGAAGTTTTGGACAATGCTGCAAAGTGTATTCAGCGTCGGCTGCTTACATTTATTGCACGCAGGGATTTCATCTCAATCCGAGCTGCTGCATTTTCTCTTCAAGCATGCTGCAGGGGATGCCTTGCCCGAAAGATATATGCTTCTAAACGGGAGACTGCAGCAGCTGTCTCCATTCAGAAATATATCCGTATGTGTTTGATGAGGCATGCTTACATGGCACTATATTCTTCTGCCATTCTCATACAATCCAATATTCGTGGTTTCACAACTCGCCAAAGATTCTTGCATAGAAAAGAACACAAGGCTGCTACTTTTATTCAGGCCTATTGGAGGATGTGCAAGGTTCGTTCTGCTTTCCAACAACATCAAGGTTCAATTGTGGCAATACAATGCCTTTGGCGGTGTAGACAAGCAAAGAGAGAGCTTCGTAGACTTAAACAAGAGGCTAATGAAGCTGGTGCCCTGCGTTTAGCTAAGAATAAACTTGAGAAACAATTGGAGGAGCTCACATGGCGTTTGCATCTTGAAAAAAAAATTAGGGTGTCTAATGAAGAAGCTAAGCAAGTTGAGATTTCCAAACTTCAGAAGATGTTAGAAGCTCGGAATGTTGAATTAGATGCGGCTAAATTGGCAACAATTAACGAGTCAAATAAGAATGCAATTTTGCAAAATCAGTTGCAATTGTCAGCAAAGGAAAAATCTGCTTTAGAAAGAGAGCTAGCTACCATGAATGAAGTGCGGAAGGAAAATGCTCTATTGAAGGGTTCTTTGGATGCCTTTGAAAAGAAGAGCACAGCTTTGGAGCTTGAACTTGTGAATGCTCAAAAAGACCATAATGAAACCATTCAGAAAATGAGGGATGTTGAACAGAAGTGTTCTCAACTTGCACAAAATGTGAAAAGTCTTGAAGAAAAGCTGTTGAGTTTAGAGGATGAAAATCATGTGCTTCGTCAGACAGCCTTAAGTGTATCTCCTAATCGTAGTCGTCCTGGTTTTGCAAAGTCATCGTCAGAAATATACGCCAGTGCAATAGTTCCCCGCAGTGAGCGAAAGCCAATATTTGAATCACCTACACCCACAAAACTTATAGCCCCTTTTACACTTGGCTTGTCAGACTCTCGTCGATCTAAATTAACAGCAGAGAGGCACCAGGTATCACTCTTGTTTCCTTGTTCCTAA 3381 0.4058 MPEPAMNLRKGSKVWVHDKDWAWLPAEVLEYAGKQVRLATSSGKKVLALPEKLFLRDADEDEHGGVEDMTRLAYLNEPGVLYNLRRRYALNDIYTYTGSILIAVNPFTKLPHLYDIHMMEQYKGAPFGELSPHVFAVADASYRAMMNEGQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRTVEQQVLESNPLLEAFGNARTIRNDNSSRFGKFVEIQFDSSGRISGAAIRTYLLERSRVVQTTDPERNYHCFYQLCASERDVEKYKLGHPSQFHYLNQSKVYELDGVSSAEEYMKTRRAMDIVGISHEDQEAIFCTLAAILHLGNIEFSPGKEHDSSVIKDEKSRFHLQMAANLFKCDLNLLLATLCTRSIQTREGNIVKALDCNAAVAGRDALAKTVYARLFDWLVDKINWSVGQDINSQVQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKKPIGIIALLDEACMFPKSTHETFSTKLFQHFLSHPRLEKEKFSETDFTVSHYAGKVTYHTDTFLDKNRDYVVLEHCNLLSSSKCAFVSGLFPLLPEESSRSSYKFSSVASRFKQQLQALMETLNTTEPHYIRCVKPNSLNLPQKFENTSVIHQLRCGGVLEAVRISLAGYPTRRTYSEFVDRFGLIAPEFMDGSYDDRAATQKILEKLKLENFQLGRTKVFLRAGQIGILDSRRAEVLDNAAKCIQRRLLTFIARRDFISIRAAAFSLQACCRGCLARKIYASKRETAAAVSIQKYIRMCLMRHAYMALYSSAILIQSNIRGFTTRQRFLHRKEHKAATFIQAYWRMCKVRSAFQQHQGSIVAIQCLWRCRQAKRELRRLKQEANEAGALRLAKNKLEKQLEELTWRLHLEKKIRVSNEEAKQVEISKLQKMLEARNVELDAAKLATINESNKNAILQNQLQLSAKEKSALERELATMNEVRKENALLKGSLDAFEKKSTALELELVNAQKDHNETIQKMRDVEQKCSQLAQNVKSLEEKLLSLEDENHVLRQTALSVSPNRSRPGFAKSSSEIYASAIVPRSERKPIFESPTPTKLIAPFTLGLSDSRRSKLTAERHQVSLLFPCS. 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01162 1126 Gene3D Myosin VI head, motor domain, U50 subdomain 313 603 - -
Seca3g01162 1126 SMART MYSc_2a 58 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g01162 1126 Gene3D Kinesin motor domain 67 664 IPR036961 -
Seca3g01162 1126 ProSiteProfiles IQ motif profile. 808 837 IPR000048 GO:0005515
Seca3g01162 1126 CDD MYSc_Myo11 78 722 IPR036018 -
Seca3g01162 1126 Gene3D - 834 884 - -
Seca3g01162 1126 Gene3D - 736 786 - -
Seca3g01162 1126 Gene3D - 787 833 - -
Seca3g01162 1126 SMART iq_5 736 758 IPR000048 GO:0005515
Seca3g01162 1126 SMART iq_5 807 829 IPR000048 GO:0005515
Seca3g01162 1126 SMART iq_5 784 806 IPR000048 GO:0005515
Seca3g01162 1126 SMART iq_5 759 781 IPR000048 GO:0005515
Seca3g01162 1126 SMART iq_5 832 854 IPR000048 GO:0005515
Seca3g01162 1126 SMART iq_5 855 877 IPR000048 GO:0005515
Seca3g01162 1126 PRINTS Myosin heavy chain signature 94 113 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g01162 1126 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g01162 1126 PRINTS Myosin heavy chain signature 483 511 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g01162 1126 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g01162 1126 PRINTS Myosin heavy chain signature 151 176 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g01162 1126 PANTHER MYOSIN 59 1032 - -
Seca3g01162 1126 ProSiteProfiles Myosin motor domain profile. 64 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g01162 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 883 IPR027417 -
Seca3g01162 1126 ProSiteProfiles IQ motif profile. 833 862 IPR000048 GO:0005515
Seca3g01162 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 783 IPR027417 -
Seca3g01162 1126 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Seca3g01162 1126 FunFam Myosin heavy chain 254 308 - -
Seca3g01162 1126 Gene3D - 669 735 - -
Seca3g01162 1126 Gene3D - 440 625 - -
Seca3g01162 1126 Coils Coil 953 1053 - -
Seca3g01162 1126 Pfam IQ calmodulin-binding motif 834 854 IPR000048 GO:0005515
Seca3g01162 1126 Pfam IQ calmodulin-binding motif 786 805 IPR000048 GO:0005515
Seca3g01162 1126 Pfam IQ calmodulin-binding motif 810 828 IPR000048 GO:0005515
Seca3g01162 1126 Pfam IQ calmodulin-binding motif 761 780 IPR000048 GO:0005515
Seca3g01162 1126 Pfam Myosin head (motor domain) 66 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g01162 1126 Gene3D - 254 311 - -
Seca3g01162 1126 ProSiteProfiles IQ motif profile. 785 811 IPR000048 GO:0005515
Seca3g01162 1126 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 9 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca3g01162 1126 Coils Coil 869 913 - -
Seca3g01162 1126 ProSiteProfiles IQ motif profile. 856 885 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01162 Seca-Chr3 20039026 20065822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01162 6 1117 Myosins gene family AT4G33200 73.046 0.0 1673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01162 K10357 - gmx:100796413 1973.75