Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01157 ATGAGTTCTAAAAAGATTACATGGAAGTCCATTGTCTTGATCTTGAATTGTTACAAGACTAAATGCCCTTTGCAGGAATCAGAAAAACAGGTTTTAAAACAAGGTTCTTTCCAAAGACTATGCCTCTCTGATGTAAGCATTTCAAGCTCCACTCAGGCCATTGAAGATATTTCCATTTCCTTAGTTGGCTCAAAGCTTTACACATTCACCTTAGATGAGCTGAAAGAAGCAACACATAATTTCTCATGGAGTAATCTGCTTGGTGAAGGTGGGTTTGGACCTGTGTACAAAGGTTTTGTTGATGACAAACTCAAACCTGGTTTGAAGGCTCAACCTGTAGCTGTGAAGAGACTGAACTTGGATGGCTTGCAAGGTCACAGAGAGTGGCTGGCAGAAATTATATTTCTTGGACAGCTGAGACATCCACATCTTGTGAAGTTAATTGGATACTGTTGTGAGGAGGAGCACAGGCTTTTGGTGTATGAATACATGGCAAGAGGGAGTTTGGAGAATCAATTGTTCAGAAGATACTCTGCTGCCTTGCCATGGTCAACCAGGATGAAAATTGCATTAGGTGCAGCTAAGGGTTTGGCCTTCCTTCATGAAGCAGATAAACCTGTAATATACAGGGATTTCAAAACTTCAAATATCTTACTTGACTCGGTATGTTCTCCTGCTGAGGTCACAAAGAAATTAAAAGTTTCTGATCTATGCAACTTTTTTTTCCCCCTAATTCAGGATTACACAGCTAAACTATCAGACCTTGGGCTAGCTAAGGATGGTCCTGATGGGGAACATACACATTTAACAACAACATGCATAATGGGAACACGAGGCTATGCTGCTCCTGAGTACATCATGGCAGGTCACCTGTCCACCAAGAGTGATGTGTATAGCTATGGAGTTGTTTTGTTGGAATTGCTTACTGGAAAACGTGTAGTGGACAAGAGCCGGCCTAATAGAGAGAGAAGCCTGGTGGAATGGGCAAGGCCTCTTTTGAGAGATCAAAGGAAGCTGCATCATATCATAGACCCAAGATTGGAAGGGCAATTTCCTATGAAAGGTGCTCTGAAGGTTGCTGCATTGACTTATAAATGCTTAAGCCACAACCCCAATCCAAGGCCCAATATGAGTGATGTGGTAAAGATATTGGAGTCACTTCAGGACTTTGAAGATGTGATTATAGGACCATTTGTGTATGTGGCCGTTAGTGAAAGTGGTCATTGA 1227 0.4189 MSSKKITWKSIVLILNCYKTKCPLQESEKQVLKQGSFQRLCLSDVSISSSTQAIEDISISLVGSKLYTFTLDELKEATHNFSWSNLLGEGGFGPVYKGFVDDKLKPGLKAQPVAVKRLNLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMARGSLENQLFRRYSAALPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKTSNILLDSVCSPAEVTKKLKVSDLCNFFFPLIQDYTAKLSDLGLAKDGPDGEHTHLTTTCIMGTRGYAAPEYIMAGHLSTKSDVYSYGVVLLELLTGKRVVDKSRPNRERSLVEWARPLLRDQRKLHHIIDPRLEGQFPMKGALKVAALTYKCLSHNPNPRPNMSDVVKILESLQDFEDVIIGPFVYVAVSESGH. 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01157 408 Gene3D Phosphorylase Kinase; domain 1 42 163 - -
Seca3g01157 408 Gene3D Transferase(Phosphotransferase) domain 1 164 395 - -
Seca3g01157 408 FunFam Serine/threonine-protein kinase BIK1 48 163 - -
Seca3g01157 408 Pfam Protein tyrosine and serine/threonine kinase 84 384 IPR001245 GO:0004672|GO:0006468
Seca3g01157 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Seca3g01157 408 PANTHER OS01G0588500 PROTEIN-RELATED 50 388 - -
Seca3g01157 408 ProSiteProfiles Protein kinase domain profile. 81 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01157 408 SUPERFAMILY Protein kinase-like (PK-like) 57 385 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01157 Seca-Chr3 19933948 19937459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01157 68 384 Glycoside Hydrolase AT3G07070 48.125 5.73e-93 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca3g01157 PK_Tyr_Ser-Thr 2.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01157 - - gmx:100805771 680.248