Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01152 ATGGGTTCCTCAGACCAAAACCATAACCAGGACCAGAACCAAAATAATAGTCTCAAGAGAACCTTCGATCACTTATACACAAAGCCCGAACCTGATGATTCTCCATTTCAAGAATCGCTTTCACCTGACAACATTGATCCCAGAGGGTATCAGTTAGAGGTGTTTGAAGTTGCAAGAAGGAGGAATACAATAGCAGTATTGGACACAGGCTCTGGCAAGACATTGATAGCTATAATGCTTATAAAAGACATTGGCCAAGCAATCAAGTCTTGTGGGGTAAAGAAGTTGATTGTTTTCTTAGCTCCCACTGTTCATCTTGTCAATCAGGCACGTTTCCTAAATCACATGTTAAATTTAACTGGTGTTTGTGACTCCACTTTGCAGCAATACAAGAATATAAAACATCTTACAGATTTTCAAGTGGAGGAATACTATGGGGCTAAAGGGGTCGATACATGGAATGGAAAGACCTGGGAGAAGGAGATTAGTGACAATGATGTACTGGTAATGACACCCCAGATTCTTTTGGATGCCTTAAGAAAAGCATTCCTGAGTATAGAAATGATATGCTTGATGATTGTTGATGAATGTCATAGAGCAACTGGCAACCATCCCTATGCAAAAATAATGAAGGAATTTTATCACCAAGCTAATGAAAAGCCAAAAGTTTTTGGGATGACAGCATCGCCAGTAGGTAAAAAAGGTATTTCCTCTACTTTGGATTGTGAGGGTCAGATATCAGAACTTGAAAACATCTTGGATGCTCAGAGATATACTGTTGAAGATCGGACAGAGATGGATGTATATATCCCTTCTGCAAAAGAGAGTTGTATATATTATGACCAAGCACGGTCTCCTGCTTTGAATTTAAAGCCAAAGATTGAAGCCTTGTGGTTGAAGTGTGATGCATTGTTGTCAGAATTTCAGAGTAACTACAAGGACATGGACAATAAATTTAAGACACTGCATCAGCGGATGTCAAATGAACTTGCAAAAATTTTACATTGCCTTGAAGATCTTGGACTCTTATGTGCTTACGAGGCTGTTAAAATCTGTCATGAAAATTTCTCCAAAATTGAAGGAGAGTGTGAAGTTTATAGAAAAGGTTATCTTCGGTGTATAACTGTCATTGAAGAAGTAATTCAAATAATTGAAGAATCCCTCCATCTTGCTGATAAAATGATTTTGGATGCTGAATTTGATTATTCAAAGGCAGTAGACTTGGGATACATATCTCCAAAATTACATGAACTTATTAAACTCTTCCAGACTTTTGGAGAATCTAGTCAGGTGTTGTGCCTTATTTTTGTTGAAAGAATCATTACAGCTAAGGTGATTGAAAGATTTGTAAAGAAAGTTTCCCAAATATCTCATTTCACAGTTTCCTATTTAACTGGAAACAATACATCGGTTGATGCACTGGCTCCTAAGAGGCAGAAGGAGATATTGGATTCTTTTCGATCTGGAAAGGTCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTTCCAAACTGCTCTTGTGTGATACGTTTTGACCTCCCCAAGACAGTTTGTAGTTATGTCCAATCTCGGGGAAGATCTAGGCAGGCTAACTCCCAATTTATTTTGATGTTGGAGAGGGGAAACTTGAAACAAAGAAATCAACTCTTCGACATAATCAGGAGTGAGCGCTCCATGACTGATGCAGCTATTAATAAAGACCATGAATCTAATTTAAGGGCGTTTACAGTAGAGAAAACAAATGCATACCATGTGGACTCTACTGGAGCATCAGTCACTTTAGATTCTAGTGTTACACTTATAAATAAATATTGTGAAAAGCTCCCACGAGATAAGTACTCATGTACAAAGCCCACTTTCGAGTTTCTGCCTATGGAGGGGTGTTACCAATGCAAATTAATTTTACCACCTAATGCAGCTTTCCAAACAATAATTGGTCCTTCAGGAAAAGATGTTCGTTTGGCAAGGAATCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGTGCCTTAAATGAACATCTTGTCCCATCCATTGAAGATCCTTCGGAAGCTGACCATATTGTGAAAAACAAAGATTCAAGTTCAGGTGCAGGAACCACAAAAAGAAAGGAGTTACATGGCACAACCAGCATTCGTTCATTATGCGGTACATGGGATGACAAACTCGATGGAGCCAAATTTCATGCTTATAAATTCGAATTCACTTGTAATATTGTTAGTGAAATTTATTCTGGATTTGTTCTTCTGATGGAGTCAAAGCTTGATGATGATGTGGGAAATATTGAATTGGATCTTTATTTGGTCTCTAAGACTGTGAAGGCTTCAGTCTCTTCCTGTGGGCAAGTTGATCTGGATGCTGAACAGATGATGAAAGCTAAATGTTTCCATGAGCTTTTCTTCAATGGTTTGTTTGGGAAATTGGTTCTTAGGTCCAAATCAGCCAAAGGGGAATGGGAATTTTTACTTCAAAAGGACACAAAATTATTGTGGAGCCCAAAAAACTTATATTTGCTTCTACCACTTGAGAAATTCCGTGATATATCTAAGGGTTCTTTGCAAATACATTGGTCTGGAATCAATTCTTGTGCATCTGCAATTGAATTTTTAAGGCGGAAATTTTCATTGGTTGCTGGAGATGGTGCTGATAAGGGCAAAATCACATCACCATGTGATACCAGTTCATCACATATGGAATACGAAAGTGCACACGAGATTCACTTTGCTAATTGTGTGGTCAACATTAATAATCTGAAAAATATGGTGGTTTTGGCCATTCACACTGGGAAAATATATTGTATCATTGAAGTAGTCACTAGCCTATCTGCTGAAAGTCCTTTTGATGGAAACAATGAAAAGTCTGGGGCAGAATGCATAACTTTCTCGAATTATTTCAACAAAAGGTATGGGATTACGCTGAGACATCCAGGACAGCCTTTGTTACGGTTGAAGCAAAGTCATAATCCGCACAATCTTTTTTTGAACTTCCATGAGGAAGATGCCGGGGACAAGTCATCACAAATCGGCCCGGTAAATCCAAAAATGCCAGCACATGTTCACATGCCACCTGAGCTTCTATGCCTTCTTAATGTTAAAAGAGATGTTTTGAAGTCAATGTACTTGCTACCATCAATGATGTACCGTATTGAATCTTTCATGTTGTCCAGTCAGCTTAGAGAAGAGATAAATGGAGAAACTAGCAGTTTCAACATATCTAGCTCTCTGATTCTAGAAGCACTTACAACTTTAAGATGTTGTGAAAAATTTTCAATGGAGCGTCTTGAGTTGCTAGGAGATTCTATTTTGAAATATGCGGTGAGCTGTCACCTCTTTCTTAAATATCCTAAGAAACATGAAGGACAATTATCTGCCAGACGACAATCGGCTGTTCGTAATTCAACCCTACATAAACTGGGAACAGATCGCAAATTACAGGGATATATCCGAGACTCTGCGTTTGAACCGCGTCGTTGGGTTGCTCCTGGACAGCGCTCTATACACCCTGTTTCTTGTGATTGTGGGTTGGAAACCCTAGAAGTTCCTTTAGATGTGAAATTCCATACTGAAGATCCAAAAGTTGTGGTTGGGAAGTTATGTGACAGGGGTCACCGCTGGATGTGCTCAAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCGTACTATGTGGGCGGTGGATTGGTTGCTTCACTTCATGTGATGAAATGGCTTGGGATTGATTCAGAACTTGAACCATCCATGGTTGATGAAGCCATCACTGCTGCATCTCTGCACACATATATGCCAAAAGTAAATGAGATTGCAAGCCTTGAAAAGAAAATTGGATATGAATTTTCTGTCAAGGGACTCTTATTGGAGGCAATCACACATTTGTCTGGGGCAGAACTTGGGATTGGCTTCTGTTATGAGAGACTTGAATTTCTCGGCGACTCAGTGTTGGACGTGCTTATTACATGGTATCTTTATCAAAATCACACAGATATTGATCCAGGAGACTTGACCGACTTGCGATCTGCTTCTGTCAATAATGAAAATTTTGCTCAAGTTGCTGTTAGACGGAACCTTCACCAGCACCTTCTGCATAGCTCAGGATTATTACTGAGCCAGATATCAGAATATGTGAAGGTCATTTCTGAATCAGAGAATAACACCATATCACTCCCAAGCATTAGAGCTCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAATTGATACCAAGCTCAATCTTGATGAAGTGTGGAAGGTTTTCAATCCTCTGTTATCCCCCATTGTTACTCCTGATAAACTTGAACTGCCTCCATTGCGTGAACTAAATCAATTATGTGACTCGCTCGGGTATTTTGTAAAAGTAAAAGAAAAAGAAAATTTTGAAAAGGGATCCATGGAGCATGTTGAGCTTAGTGTACAGCTGCCAAATGCCCTGCTGGTTCAAGAGGGAAAGGGGCCAACTAAAAAAACTGCAAAAGGAGAAGCTGCTTTTCATTTGTTGAAGAAACTTGAGAAACGGGGGATTTCATATGGTAGTAGCATGTCCAAGGGAAAAAGAGATAATCCTGACCATATCAGTGATTCATCTCATCTCAAAAGGGATTTTAGTCTTCTCCCCTGTCAAACTGAAGAACATTCCTCAGAGCCAGTAGCGCGTAAAAGACCCAAACTGGATGAAGCTAACTTAACTGCAAATACTTCTACTGGTTTTTTGCCTCCCAAAGACTGTTCCAGTGAAGCCACTGATTGTAGTCCTTCCATTCCAGTTATTACATCAATTAATATGAAGAAGGGAGGACCCCGGACCACACTTTATGAACTGTGCAAGAGGCTGCAGTGGCCATTGCCGGCATTTGATTCAACAGAATATAAAGATAGAACTCTATTTGAATCCTGTGAAGGCCTGGAAGGAAGCAAGGGACAAAACTGTTTTGTAGCAAAAATTACCTTGTGCATACCTAATGATGGTGATATAAAATGCCAAGGAGATGCTAGAAGTGACAAGAAGAGCTCATATGACTCTGCTGCAGTTGAAATGCTTTATGAGCTACAAAGACTGGGGAAACTTGAGATTAATGTTCCCCAATAA 5115 0.3949 MGSSDQNHNQDQNQNNSLKRTFDHLYTKPEPDDSPFQESLSPDNIDPRGYQLEVFEVARRRNTIAVLDTGSGKTLIAIMLIKDIGQAIKSCGVKKLIVFLAPTVHLVNQARFLNHMLNLTGVCDSTLQQYKNIKHLTDFQVEEYYGAKGVDTWNGKTWEKEISDNDVLVMTPQILLDALRKAFLSIEMICLMIVDECHRATGNHPYAKIMKEFYHQANEKPKVFGMTASPVGKKGISSTLDCEGQISELENILDAQRYTVEDRTEMDVYIPSAKESCIYYDQARSPALNLKPKIEALWLKCDALLSEFQSNYKDMDNKFKTLHQRMSNELAKILHCLEDLGLLCAYEAVKICHENFSKIEGECEVYRKGYLRCITVIEEVIQIIEESLHLADKMILDAEFDYSKAVDLGYISPKLHELIKLFQTFGESSQVLCLIFVERIITAKVIERFVKKVSQISHFTVSYLTGNNTSVDALAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVCSYVQSRGRSRQANSQFILMLERGNLKQRNQLFDIIRSERSMTDAAINKDHESNLRAFTVEKTNAYHVDSTGASVTLDSSVTLINKYCEKLPRDKYSCTKPTFEFLPMEGCYQCKLILPPNAAFQTIIGPSGKDVRLARNLVCLEACKKLHQMGALNEHLVPSIEDPSEADHIVKNKDSSSGAGTTKRKELHGTTSIRSLCGTWDDKLDGAKFHAYKFEFTCNIVSEIYSGFVLLMESKLDDDVGNIELDLYLVSKTVKASVSSCGQVDLDAEQMMKAKCFHELFFNGLFGKLVLRSKSAKGEWEFLLQKDTKLLWSPKNLYLLLPLEKFRDISKGSLQIHWSGINSCASAIEFLRRKFSLVAGDGADKGKITSPCDTSSSHMEYESAHEIHFANCVVNINNLKNMVVLAIHTGKIYCIIEVVTSLSAESPFDGNNEKSGAECITFSNYFNKRYGITLRHPGQPLLRLKQSHNPHNLFLNFHEEDAGDKSSQIGPVNPKMPAHVHMPPELLCLLNVKRDVLKSMYLLPSMMYRIESFMLSSQLREEINGETSSFNISSSLILEALTTLRCCEKFSMERLELLGDSILKYAVSCHLFLKYPKKHEGQLSARRQSAVRNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQRSIHPVSCDCGLETLEVPLDVKFHTEDPKVVVGKLCDRGHRWMCSKTIADCVEALIGAYYVGGGLVASLHVMKWLGIDSELEPSMVDEAITAASLHTYMPKVNEIASLEKKIGYEFSVKGLLLEAITHLSGAELGIGFCYERLEFLGDSVLDVLITWYLYQNHTDIDPGDLTDLRSASVNNENFAQVAVRRNLHQHLLHSSGLLLSQISEYVKVISESENNTISLPSIRAPKALGDLVESIAGAILIDTKLNLDEVWKVFNPLLSPIVTPDKLELPPLRELNQLCDSLGYFVKVKEKENFEKGSMEHVELSVQLPNALLVQEGKGPTKKTAKGEAAFHLLKKLEKRGISYGSSMSKGKRDNPDHISDSSHLKRDFSLLPCQTEEHSSEPVARKRPKLDEANLTANTSTGFLPPKDCSSEATDCSPSIPVITSINMKKGGPRTTLYELCKRLQWPLPAFDSTEYKDRTLFESCEGLEGSKGQNCFVAKITLCIPNDGDIKCQGDARSDKKSSYDSAAVEMLYELQRLGKLEINVPQ. 1705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01152 1704 FunFam Endoribonuclease dicer-like protein 43 299 - -
Seca3g01152 1704 SUPERFAMILY PAZ domain 920 1035 IPR036085 GO:0005515
Seca3g01152 1704 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1445 1514 IPR014720 -
Seca3g01152 1704 Gene3D Dicer dimerisation domain 596 693 IPR038248 -
Seca3g01152 1704 FunFam Dicer-like 104 1056 1245 - -
Seca3g01152 1704 FunFam Dicer-like 104 912 1033 - -
Seca3g01152 1704 CDD DEXHc_dicer 47 262 - -
Seca3g01152 1704 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 248 IPR014001 -
Seca3g01152 1704 CDD SF2_C_dicer 410 542 - -
Seca3g01152 1704 Gene3D Ribonuclease III domain 1262 1439 IPR036389 GO:0004525|GO:0006396
Seca3g01152 1704 Gene3D Ribonuclease III domain 1063 1244 IPR036389 GO:0004525|GO:0006396
Seca3g01152 1704 ProSiteProfiles PAZ domain profile. 923 1036 IPR003100 GO:0005515
Seca3g01152 1704 Gene3D - 42 296 IPR027417 -
Seca3g01152 1704 Pfam Type III restriction enzyme, res subunit 52 230 IPR006935 GO:0003677|GO:0005524|GO:0016787
Seca3g01152 1704 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 601 691 IPR005034 GO:0016891
Seca3g01152 1704 ProSitePatterns Ribonuclease III family signature. 1310 1318 IPR000999 GO:0004525|GO:0006396
Seca3g01152 1704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 217 IPR027417 -
Seca3g01152 1704 MobiDBLite consensus disorder prediction 1 43 - -
Seca3g01152 1704 Gene3D paz domain 908 1034 - -
Seca3g01152 1704 FunFam Endoribonuclease dicer-like 1 1268 1440 - -
Seca3g01152 1704 Gene3D - 407 570 IPR027417 -
Seca3g01152 1704 ProSiteProfiles Ribonuclease III family domain profile. 1061 1233 IPR000999 GO:0004525|GO:0006396
Seca3g01152 1704 Gene3D - 1615 1694 - -
Seca3g01152 1704 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 417 572 IPR001650 -
Seca3g01152 1704 CDD RIBOc 1290 1440 IPR000999 GO:0004525|GO:0006396
Seca3g01152 1704 SUPERFAMILY RNase III domain-like 1074 1250 IPR036389 GO:0004525|GO:0006396
Seca3g01152 1704 ProSiteProfiles Ribonuclease III family domain profile. 1274 1419 IPR000999 GO:0004525|GO:0006396
Seca3g01152 1704 CDD RIBOc 1080 1244 IPR000999 GO:0004525|GO:0006396
Seca3g01152 1704 MobiDBLite consensus disorder prediction 1 22 - -
Seca3g01152 1704 Pfam PAZ domain 922 1056 IPR003100 GO:0005515
Seca3g01152 1704 FunFam Endoribonuclease dicer-like 1 596 692 - -
Seca3g01152 1704 SUPERFAMILY RNase III domain-like 1273 1439 IPR036389 GO:0004525|GO:0006396
Seca3g01152 1704 PANTHER DICER-RELATED 61 1519 - -
Seca3g01152 1704 Pfam Dicer dimerisation domain 601 685 - -
Seca3g01152 1704 FunFam Endoribonuclease dicer-like 1 405 568 - -
Seca3g01152 1704 Pfam Helicase conserved C-terminal domain 418 531 IPR001650 -
Seca3g01152 1704 SMART ultradead3 43 261 IPR014001 -
Seca3g01152 1704 MobiDBLite consensus disorder prediction 1519 1538 - -
Seca3g01152 1704 Pfam Ribonuclease III domain 1098 1232 IPR000999 GO:0004525|GO:0006396
Seca3g01152 1704 Pfam Ribonuclease III domain 1310 1418 IPR000999 GO:0004525|GO:0006396
Seca3g01152 1704 SMART riboneu5 1080 1253 IPR000999 GO:0004525|GO:0006396
Seca3g01152 1704 SMART riboneu5 1289 1442 IPR000999 GO:0004525|GO:0006396
Seca3g01152 1704 SMART helicmild6 447 534 IPR001650 -
Seca3g01152 1704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 549 IPR027417 -
Seca3g01152 1704 SMART PAZ_2_a_3 898 1060 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01152 Seca-Chr3 19852794 19875469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01152 432 531 Eukaryotic Initiation Factors Gene Family AT3G19760 37.383 7.49e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01152 K11592 - gmx:100806831 2588.91