Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01150 ATGGATTTTTCAACGGGAGATGTTGGTGGGTCTGGTGATGAAGACACTCAGAACTCAATGGAAAAAAAATCCCCTTACAGTCGTCTCAATGTCGCACAAACAACTATACTTGAAAATTTCTTCAAGGAATGCCCAATTCCAGATAAAGATCGACAACGTCAATTGGCTGATAAGGTTGGACTTGAACCCAAACAAATTAAGTTTTGGTTTCAGAACAAGAGGACTCAAACAAAGGTTCAACGCAAGCGAGAAAATAATACTACTCTTCGAGTTGAGAAGGATAGGATGCTTAACGAAAACCTCCAAATGAAAGAGGCAATAGAGAATATAATTTGCCAAGATTGTGGGGGTCCACCGTTACTTGAAGAAGAGCATGAAAGTTTCATGCGACAAATGCAACTTCAAAATACAATGATAAAAGAAAAGCATGGGAAAGTGTGTAACCTTCTTGCAAGGTACTTAGAGAAATATATGTCAACACCTAGGTTGCAGCAAGTTCCTATTCCTATAACTGAATCTTCTTCACATGAGCCAGCACTCAATGGAAGTTCAAGTACATCTCTTGATCAAAGTCTTGGTTTTCACAACCCAATGGAAATTTTTATTATGGAAAAAGCATTGATGTCTGAGATCGCAACTTCTGCAAAGGAAGAACTAGTTAAACTTTTGCGCATTAATGAGCCTTTCTGGGTCAACTCATCAGCTCCAGATGGAAAACTCACCCTTCATCGTGAAACTTATGAAAAAATTTTCCCTCAGACTAATCACATGAAAGGTGAAAATGTGCATCTAGAATCATCAAAAGATTCAGGAGTAATGAACATTAGGAGCAAGGAATTGGTTGATATATTTCTAGATGCGGAAAAATGGAAAGACTGCTTTCCAACAATTGTTACAAAAGCAGAAACAATCAAAATATTTGAAAATGGTTTGATGGAAAATCGAAGTGGAGCCTTGCACTTGTTGTATGAAAAATTACATGTTCTTTCACCTTTAGTGCGGCCTCGTGAATTTTATTTCCTTCGCTATTGTCAACAAGTTGACACTGGGGTGTGGGTGATAACATACATATCTTATGACTCTTTTCGAGTAAGCTCCTCCCCTCTTTATCGTTCTTGGAGATACCCTTCTGGATGCATGATTCGTGAAATCTCTAATGGGTGTTGCGAGCTCACATGGGTTGAGCATGTGGAAGTGGATGATGAGATTCATACCCACCAACTATATAGAGATCTTGTTGGCGTCAATATTGATTATGGAGCAAGAAGATGGATATTGGAACTTCAAAGAATGTGTGGGAGATTTGCTTCCTTTCATGTTAAAAAGATACCTTATCAAGACTTTGGAGGAGTGATTGATTCACTTGAAGGGAGGAAGGGTGTAATGAAGTTTTCTCATCAAATGGTTAAGACATTCTGTGAAAGTTTAACCATGTCAAGTCATGAGCCAGACTTCCCACATTTAACTGTGGGAAATAATAATGGGGTTAGGGTCAATGTTCGCAAAAGCATGGGCATAGGCCAACCAAATGGAACAGTTGTTATGGCTGCTACCTCCTTTTGGCTTCCTCTCCATTATGAGAAAGTTTTTGAGTTTCTCATAGATCACAAAAGACGAGCTCAGTGGGATGATCTTGCTCGTGAAAATCCAATGCATTTGGTTGCACACATTTCAAATGGAATTCATCTTGGCAACTGTATTTCAATTATTCAGTCATTCATCCCTAGTGAGAACGACGTCGTGATTCTTCAGGAAAGTTTTACACACCCCATGGGATCGTATGTTGTATATGCTCAAACTAATTTAGCAACAATGAATTTGGCTATAAGGAGTGAAGATTCTTCTATGTTATCGATTCTTCCATCAGGTTTTGTCGTCTCTCCAAATGGCCAACCAAAAGAAACTTTGGGAGCAATTATTAGTGAAAATGTTGATAGATCAAGAGGTTCGTTATTAACTGTGCTTTTCCAGGTATTGGCTAGTAGTCCAGATGGGAGCAAACTTCTGAATATGGAATTTGTTACAACTCTCAACACTCTTTTAACCTCAACAGTTGAAAAAGTGAAGGAAGCTCTGAACTTTAATAGTGCAGAGTAG 2097 0.3858 MDFSTGDVGGSGDEDTQNSMEKKSPYSRLNVAQTTILENFFKECPIPDKDRQRQLADKVGLEPKQIKFWFQNKRTQTKVQRKRENNTTLRVEKDRMLNENLQMKEAIENIICQDCGGPPLLEEEHESFMRQMQLQNTMIKEKHGKVCNLLARYLEKYMSTPRLQQVPIPITESSSHEPALNGSSSTSLDQSLGFHNPMEIFIMEKALMSEIATSAKEELVKLLRINEPFWVNSSAPDGKLTLHRETYEKIFPQTNHMKGENVHLESSKDSGVMNIRSKELVDIFLDAEKWKDCFPTIVTKAETIKIFENGLMENRSGALHLLYEKLHVLSPLVRPREFYFLRYCQQVDTGVWVITYISYDSFRVSSSPLYRSWRYPSGCMIREISNGCCELTWVEHVEVDDEIHTHQLYRDLVGVNIDYGARRWILELQRMCGRFASFHVKKIPYQDFGGVIDSLEGRKGVMKFSHQMVKTFCESLTMSSHEPDFPHLTVGNNNGVRVNVRKSMGIGQPNGTVVMAATSFWLPLHYEKVFEFLIDHKRRAQWDDLARENPMHLVAHISNGIHLGNCISIIQSFIPSENDVVILQESFTHPMGSYVVYAQTNLATMNLAIRSEDSSMLSILPSGFVVSPNGQPKETLGAIISENVDRSRGSLLTVLFQVLASSPDGSKLLNMEFVTTLNTLLTSTVEKVKEALNFNSAE. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01150 698 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 693 IPR042160 -
Seca3g01150 698 SUPERFAMILY Bet v1-like 203 434 - -
Seca3g01150 698 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Seca3g01150 698 SMART START_1 210 434 IPR002913 GO:0008289
Seca3g01150 698 MobiDBLite consensus disorder prediction 1 27 - -
Seca3g01150 698 SUPERFAMILY Homeodomain-like 12 80 IPR009057 -
Seca3g01150 698 CDD START_ArGLABRA2_like 205 432 - -
Seca3g01150 698 Pfam START domain 211 432 IPR002913 GO:0008289
Seca3g01150 698 CDD homeodomain 23 81 IPR001356 GO:0003677
Seca3g01150 698 SMART HOX_1 22 84 IPR001356 GO:0003677
Seca3g01150 698 Pfam Homeodomain 26 78 IPR001356 GO:0003677
Seca3g01150 698 Coils Coil 79 99 - -
Seca3g01150 698 ProSiteProfiles START domain profile. 201 437 IPR002913 GO:0008289
Seca3g01150 698 ProSitePatterns 'Homeobox' domain signature. 55 78 IPR017970 GO:0000981|GO:0006355
Seca3g01150 698 SUPERFAMILY Bet v1-like 468 689 - -
Seca3g01150 698 Gene3D - 11 97 - -
Seca3g01150 698 Gene3D - 209 408 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01150 Seca-Chr3 19828176 19832855 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01150 22 697 Homeobox Transcription Factor Family AT1G73360 39.771 2.44e-171 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g01150 START 5.2e-31 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01150 K09338 - gmx:100795075 822.002