Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01143 ATGGCGGATGTGATGGTGATGAGAGAGATTGAGGACAAAGCCTCGCTTCTTGGAATCGATCTTTCTACTCTTGATCTCGACGCCATTCGCCTTCCTCCAGGCGATGATTGTGGCATCGCCAGTGATGATGAGGATATTTATCAAGAGGATAATCTTGAGTTCGACTCTGGATTCGCCAACATTATAGTGGTGGATAACCTCCCCGTTGTTCCACGAGAGAAGTTCGAGAAGCTCGAAGGAGTTGTTCGTAAAATTTATAGTCAGATTGGTGTTATCAAGGAGGATGGCCTCTGGATGCCCATTGATCCTGAAACCGAAAAGACGTTAGGTTATTGCTTCATTGAGTACAATACTCCTCAGGAAGCTGAGCTTGCTAAAGAGAAGACTCATGGATACAAATTGGACAGGGCACACATTTTTTCTGTTAGCATGTTCGATGACTTTGACAGGTTTATGAAAGTTCCAGACGAGTGGGCTCCTCCTGAAACTAAGCCATATGCAGCAGGGGAAAATCTTCAGCATTGGCTCACTGATGCGAAGGCCCGAGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAATGACGCAAGGCATTTAAAGCCTGACCCTGTTTATAAGCGTACATTTTGGACTGAGAGTTTTGTGCAATGGTCCCCTCTTGGCACATACTTGGCAACTGTTCACAGGCAGGGGGCAGCAGTCTGGGGAGGTGCTACAACCTTTAATCGTCTCATGCGATATGCTCATCCTCAGGTTTTCTTTGTGTTTCATTTTGTATTGTTGGTCAAACTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGCAGCCATGAACCAAGCAATCCTCGAGATGCTAATAGGGTTGTGATAAATATATTTGATGTGAGGACTGGTAAAGTGATGAGGGACTTTAAAGGAAGTGCTGATGATTTTGCAATTGGAGGTGCTGGGGGTGTTTCCGGAGCATCATGGCCTGTTTTCAAATGGAGTGGTGGAAGGGAAGATAAGTACTTTGCAAGGATGGGAAAAAATATACTTTCTGTATATGAGACAGAGACTTTTTCTCTCGTTGACAAAAAGTCCTTAAAGGTTGAAAATATAATGGATTTCAGCTGGTCTCCAACTGATCCAATCATTGCACTCTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCTAGGGTAAGTCTGATTCAAATCCCCAGCAAAGAGGAACTCAGACAGAAGAACCTTTTTAGTGTTAGTGACTGCAAGATGTACTGGCAAAGCAATGGGGATTACCTTGCTGTTAATGTAGACCGATATACCAAAACTAAAAAAAGCACATACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGTGACATACCAATTGAAGTTCTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCTTGGGAGCCAAAAGGCCATAGGTTTGCTGTTATTCATGGTGATAACCCGAAGCCTGATGTTAGCATTTACTCTATGCGGACTGCTCAGAACACTGGTCGGGTTTCAAAGCTCACTACTCTTAAGGGCAAGCAGGCAAATGCTTTGTTTTGGTCACCTGCAGGTCGCTTTATTGTACTAGCAGGGTTGAAAGGCTTCAATGGACAGTTGGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGACCCAACTGGAAGGTATGTTGCGACTGCTGTGACTTCAGTTCATGAGATGGAAAATGGTTTCAACATTTGGTCGTTTAATGGCAAGCATCTGTATCGGATATTGAAGGATCACTTCTTTCAGTTCTTATGGAGACCAAGGCCACCATCTTTCTTGACTCCCGAGAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATACGAGGCAGAGGATCAAGATGTTTCATTGCTGCTGAGTGAGCAGGAGCGTGAGAAGCGTAGGATGTTGAAAGAAGACTGGGACAAGTGGGTCAATGAATGGAAGCGGATGCATGAAGAAGAGAAGTTATATAGGCAAAAGCTTCGGGATGGAGAGGCCAGTGACGAAGAAGAGGAATACGAGGCAAAGGACATTGAGGTGGAGGAGGTCATTGATGTAACTGAAGAGGTCCTTCACTTTGAGTATGGTCAAGAGTGA 2190 0.4356 MADVMVMREIEDKASLLGIDLSTLDLDAIRLPPGDDCGIASDDEDIYQEDNLEFDSGFANIIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPIDPETEKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFSVSMFDDFDRFMKVPDEWAPPETKPYAAGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVFFVFHFVLLVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGAGGVSGASWPVFKWSGGREDKYFARMGKNILSVYETETFSLVDKKSLKVENIMDFSWSPTDPIIALFVPEMGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDVSIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEDWDKWVNEWKRMHEEEKLYRQKLRDGEASDEEEEYEAKDIEVEEVIDVTEEVLHFEYGQE. 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01143 729 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Seca3g01143 729 SUPERFAMILY DPP6 N-terminal domain-like 217 608 - -
Seca3g01143 729 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Seca3g01143 729 CDD RRM_eIF3B 60 143 IPR034363 -
Seca3g01143 729 FunFam Eukaryotic translation initiation factor 3 subunit B 181 392 - -
Seca3g01143 729 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 723 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Seca3g01143 729 SUPERFAMILY RNA-binding domain, RBD 60 140 IPR035979 GO:0003676
Seca3g01143 729 SMART rrm1_1 61 143 IPR000504 GO:0003723
Seca3g01143 729 FunFam Eukaryotic translation initiation factor 3 subunit B 421 636 - -
Seca3g01143 729 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Seca3g01143 729 PIRSF Transl_init_eIF3b 7 723 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Seca3g01143 729 Gene3D - 55 154 IPR012677 -
Seca3g01143 729 Gene3D - 425 630 IPR015943 GO:0005515
Seca3g01143 729 Gene3D - 178 393 IPR015943 GO:0005515
Seca3g01143 729 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 38 721 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Seca3g01143 729 Pfam Eukaryotic translation initiation factor eIF2A 416 616 IPR013979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01143 Seca-Chr3 19684980 19689642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01143 5 723 Eukaryotic Initiation Factors Gene Family AT5G27640 76.389 0.0 1182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01143 K03253 - gmx:100779711 1374.38