Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01137 ATGGACAAACATGCCATGGTTGGTGGTGCTGGTGCTACAACTGATCACACTCTATCATCTTGTGGAGTTAATAATGATAACAACAAGTTGTACAAAGGTGTGAGAAAGAGAAAGTGGGGTAAATGGGTTTCTGAAATAAGGCTTCCGAATAGCCGTGAACGCATATGGCTGGGGTCTTATGACTCACCTAAGAAGGCTGCTAGGGCCTTTGATGCTGCCCTTTACTGTCTACGTGGTCGCCATGCCAGTTTCAATTTCCCTGATACACCTTTCAATTTGGACATCAATGTAGCTGCAGCTGGTGATCAATCCCTTACCCCACAGCAGATTCAAGAGGTTGCTGCTAGGTTTGCCAACGAAGAGGACCCACAAATGTTGCAACTTGTTGATCCTCAACGTGGTGGTGGTGCAGTAGGATCGAAGTCCCACATCGAAAAAAGTGAGAGTTATACGACCGCGTCGTCATCGTCTACTCCTAGTACTAGTATAATGGAGCATGGGGACATGAACACTACAATTGATTGGACATTTTTGAATGTGTTGGATGACTCAAGTGAGGTTCTTGTTGGATCTGATTATGGCCTCTATTCTGAGATAGATATTGACAAGATCCACTCGGGTGAGTTATTGTATTCCACTACTCCACCCCCATTTCAGGAAGAAGAAGAAGAAATTGAATTAGGCGATGATGATCCTTTTTCTCATCAATCATTCCTTTGGAATTGGAACTTTTGA 735 0.4381 MDKHAMVGGAGATTDHTLSSCGVNNDNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPKKAARAFDAALYCLRGRHASFNFPDTPFNLDINVAAAGDQSLTPQQIQEVAARFANEEDPQMLQLVDPQRGGGAVGSKSHIEKSESYTTASSSSTPSTSIMEHGDMNTTIDWTFLNVLDDSSEVLVGSDYGLYSEIDIDKIHSGELLYSTTPPPFQEEEEEIELGDDDPFSHQSFLWNWNF. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01137 244 Pfam AP2 domain 31 79 IPR001471 GO:0003700|GO:0006355
Seca3g01137 244 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Seca3g01137 244 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Seca3g01137 244 MobiDBLite consensus disorder prediction 144 166 - -
Seca3g01137 244 MobiDBLite consensus disorder prediction 131 166 - -
Seca3g01137 244 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 175 - -
Seca3g01137 244 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Seca3g01137 244 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Seca3g01137 244 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Seca3g01137 244 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Seca3g01137 244 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Seca3g01137 244 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01137 Seca-Chr3 19586697 19587431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01137 31 242 AP2-EREBP Transcription Factor Family AT1G19210 40.845 5.29e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g01137 AP2 1.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01137 - - gmx:100817386 257.684