Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01120 ATGGAGAAAGACTGTAACTGTATTGAGGATATGGAGATTGAAGTTCTCCCTTCAATGTGGCCTGAAGATATTGTAACTGATGTTGGAAAACAGTTCAATATAGAAAAGCCTGGAAGAGATCAAGATATGTTAGAAGAGGTTACAATCATAGAAGAGCCAACAATAGTTGATTTCAAGCGTCTCATGGAGCTCACAAGTTTCACAGAGAAAGGTTCTTCTCAATTAGCATACCTTATGAAACACTGGGAGTATAAACAAGCCAATGTTGTACGTCTTCTAAGGGAAGAACTCGATAACCTAAGCAAACAGAGAGAGGATGTCGAGTTACGGAAGTTGGAGATATTGGAAGAGCATCGATTTGAGGAAGAAAGATACGGTGGTGATAAACGTCCAGTTTCTATATTGGATGATATTTATGATATTTGGCAAGATGTACCGTGTAGGAAAAGTGATGTTGTGGTTCATAACAAGAGGATTGAAATTGAGGCTGAGTATGATACTGTTGTGTATTGGAAACAGCGAGCACTGCACTTGGAAAAGTTGTTGGAGGCGAGTATTCAGAGAGAACAGATACTTGAAGAGAAGTTACAAGAAAGTATAGAGAATATTGAAAGACAATCCTCACCTGTGGAAGAACTCTCTCAGATCCTTAAGAGAGCAGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGGTATCGCTTTATCTATAATCATTTTCCAAGTTTGCAAGAGGAGGACATTATAGGAAAAACGGATGTTGAAATATTCACAGGATCTGGAGTTAGGGAATCTCAAGATTTCAAGAGAGAAGTTTTGGAGAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAGCTATTTGGGTCAAAGACATTCTTGATATATGTAGAGCCTGTCTTCAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATGTAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTCGAGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAATTAAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCTAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTATCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTTGATCGGGAGCAAAGACAACTCTTGGATGTTATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTGGAAGCTACCAAATTTCGTCCAAGAGAGGTAGTAAGGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATATTAACCTTAGAAGGACATGTGGCAGATGATGTACCCATCGAGGTCATTGGTGATGTTTTAAGGATTCGGCAAATTCTCACAAATTTAATCAGCAATGGCATCAAGTTTACTCATGAAGGCAAAGTTGGGATAAATCTTTATGTTGTGCAAGAGCCAACTTTTGCAAAAGCAGAAGGCATCCAAAAGATGACTCAAGACCATTCAACTATTTCAGTGAATGGAGTGAAAGAAGAAAAATATCTCTCAACACATCAAAGTGGAAGTGATCGAAATCTTCCTGATGGTCAAAAACATGATGACCATCCCAGGCAAAACCATGCATTTAATGATGAATGTAGATCTCCTGTTAAAAGCGAATGCTCAATGAACGGAGACACTGAGGAGCAACATCATTCAAATGAAACAACAGTGTGGATACGTTGTGATGTATATGATACAGGCATTGGAATACCAGAAAACGCTATACCAACTTTATTTAAAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGTGGCACAGGGTTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTAGTCTCACAGTGTCTAGCAAAGAAAATCATGGTTCTACCTTCACGTTCATACTCCCATACAAGGTTTCCATAGCTTGTGATAATTCTGATGATTCAGATGAGCTCTCAGACGTGGAGAATAATGATGCCAGGCCTGATGATACAACAGAGGGTTTCTTCCAATTCCAACCACCCACTTTGGGCTCTCTGTTCTCCTCTAATGGATCTAGTAGGACCCAGAAGTTATTGCCACACAAAATTGGATACACAAGCTCACATAAATTTAATGGGTTTTTAGAGAGTTCATCTTTATTCCCCTTTAATGACATCATATCAAAAGGGACATGTTCAGTTGATGATGCTTCTTCAGTGGTTGATGCTCCAGAGATGTCTGAATCAGCTAGCTCATCTGGTTACAGCTCAGAAACAAAGGACAGATGTTCAGTTAGAAGAGACAAACAACATCTATATAAGGCTCATGCTTGGTCCCAAGATGGTAGTGCCGTTTCTTCTCAACCTACAGTGGCAGATAGAGAAATGGCACTAGCAATGAAGTCAAGTGAACCCCAACAATCATGTCAGGATCGAGGCAAGACAAACACAACTAGCCAGTGTGTTACTAGCAGCAGTACATCAGATGTAACCAAATCCACATTAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAAATTAATGTCATGGTGACACAATCCATGATGAAGCAGTTAGGTCATAGCATAGATGTTGTAAATAACGGGGCAGAAGCAGTACGTGCAGTTCAGCGCCATACTTATGATCTGGTTCTGATGGATGTCTGCATGCCAATTATGAATGGTCTTCAAGCAACAAAACTGATTCGGTCTTTTGAGGAAACAGGCAATTGGGATGCTGCAAGAAGTGCTGGAATCGAGCAAAGTCTACCAGATCCAGATTATGAATGTTCTGTACCATCTGCAAAGCGTATCCCCATTATTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGATTCATTTGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGAGTGTCTTGAACAATTCCTAAGGTGA 3045 0.399 MEKDCNCIEDMEIEVLPSMWPEDIVTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTSFTEKGSSQLAYLMKHWEYKQANVVRLLREELDNLSKQREDVELRKLEILEEHRFEEERYGGDKRPVSILDDIYDIWQDVPCRKSDVVVHNKRIEIEAEYDTVVYWKQRALHLEKLLEASIQREQILEEKLQESIENIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVRESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVRHVLQTAAASLQKILTLEGHVADDVPIEVIGDVLRIRQILTNLISNGIKFTHEGKVGINLYVVQEPTFAKAEGIQKMTQDHSTISVNGVKEEKYLSTHQSGSDRNLPDGQKHDDHPRQNHAFNDECRSPVKSECSMNGDTEEQHHSNETTVWIRCDVYDTGIGIPENAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGSLTVSSKENHGSTFTFILPYKVSIACDNSDDSDELSDVENNDARPDDTTEGFFQFQPPTLGSLFSSNGSSRTQKLLPHKIGYTSSHKFNGFLESSSLFPFNDIISKGTCSVDDASSVVDAPEMSESASSSGYSSETKDRCSVRRDKQHLYKAHAWSQDGSAVSSQPTVADREMALAMKSSEPQQSCQDRGKTNTTSQCVTSSSTSDVTKSTLKPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGAEAVRAVQRHTYDLVLMDVCMPIMNGLQATKLIRSFEETGNWDAARSAGIEQSLPDPDYECSVPSAKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQFLR. 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01120 1014 CDD HATPase_EvgS-ArcB-TorS-like 485 674 - -
Seca3g01120 1014 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 15 1013 - -
Seca3g01120 1014 ProSiteProfiles Histidine kinase domain profile. 376 677 IPR005467 -
Seca3g01120 1014 Pfam Response regulator receiver domain 871 938 IPR001789 GO:0000160
Seca3g01120 1014 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 480 675 IPR003594 -
Seca3g01120 1014 CDD HisKA 368 430 IPR003661 GO:0000155|GO:0007165
Seca3g01120 1014 Coils Coil 182 206 - -
Seca3g01120 1014 Gene3D - 357 434 - -
Seca3g01120 1014 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 368 434 IPR036097 GO:0000155|GO:0007165
Seca3g01120 1014 FunFam Histidine kinase 5 863 1014 - -
Seca3g01120 1014 Gene3D - 863 1014 - -
Seca3g01120 1014 MobiDBLite consensus disorder prediction 543 595 - -
Seca3g01120 1014 MobiDBLite consensus disorder prediction 554 576 - -
Seca3g01120 1014 MobiDBLite consensus disorder prediction 686 706 - -
Seca3g01120 1014 SMART REC_2 869 1009 IPR001789 GO:0000160
Seca3g01120 1014 ProSiteProfiles Response regulatory domain profile. 870 1013 IPR001789 GO:0000160
Seca3g01120 1014 FunFam Histidine kinase 5 211 346 - -
Seca3g01120 1014 FunFam Putative histidine kinase 5 357 434 - -
Seca3g01120 1014 PRINTS Bacterial sensor protein C-terminal signature 602 616 IPR004358 GO:0016310|GO:0016772
Seca3g01120 1014 PRINTS Bacterial sensor protein C-terminal signature 637 655 IPR004358 GO:0016310|GO:0016772
Seca3g01120 1014 PRINTS Bacterial sensor protein C-terminal signature 661 674 IPR004358 GO:0016310|GO:0016772
Seca3g01120 1014 SMART HKATPase_4 480 677 IPR003594 -
Seca3g01120 1014 SMART HisKA_10 369 434 IPR003661 GO:0000155|GO:0007165
Seca3g01120 1014 SUPERFAMILY CheY-like 869 1014 IPR011006 -
Seca3g01120 1014 MobiDBLite consensus disorder prediction 833 861 - -
Seca3g01120 1014 Gene3D PAS domain 210 346 - -
Seca3g01120 1014 MobiDBLite consensus disorder prediction 832 861 - -
Seca3g01120 1014 Coils Coil 90 117 - -
Seca3g01120 1014 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 423 675 IPR036890 -
Seca3g01120 1014 FunFam Probable histidine kinase 1 569 680 - -
Seca3g01120 1014 CDD REC_hyHK_CKI1_RcsC-like 871 1009 - -
Seca3g01120 1014 Pfam His Kinase A (phospho-acceptor) domain 371 434 IPR003661 GO:0000155|GO:0007165
Seca3g01120 1014 Gene3D - 435 680 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01120 Seca-Chr3 19363753 19369857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01120 2 540 Histidine Kinase Gene Family AT5G10720 68.089 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g01120 HATPase_c 1.7e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01120 - - gmx:100819520 1675.6