Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01119 ATGGAGAAGCAACGCCCTAAACTAATTCATTCCTTGATCTTATTTTGGTCTCTATATTCCTACGTGAGCATGGCACAAACAGTCCCAGTGAAAGTAGGAATTGTGGTTGATGTTGGAGGAATATATGGGAAGATGGGGTTGAGTTGCATCAACATGGCCATCTCTGATTTCTATCAAACACATTCTCATTACCATACCCGCCTTCTCTTCAACGTCAGGGACTCCCAAGGAGATGTTGTTACTGCTGCTGCTCAAGCTCTAGATCTAATAAAAAATGAGGAAGTGGAAGCCATCATAGGACCAATAACATCAATGGAGGCCAACTTTGTGATCAAGCTTGGAGAGAAAACTCATGTCCCCATCATAACATTTTCAGCCACAAGTCCTTCACTAACTTCTCTAAGGAGCCAATATTCATTTCGTATATCACAAAATGATTCATCTCAAGTAAATGCCATAACCTCAATTATCCAAGCTTTTGGGTGGAAAGCAATAGTTCCCATTTACATAGACAATGATTATGGAAAAGGAATCATACCCTTTCTCACCACTTCTTTACAACAAGTCTATATCCGCATTCCATATCTCAGTGCCATTTCATCTTCAGCCACAGATGATGACATTAGAGAAGAACTTTACATGTTGATGACTATGCAAACTCGAGTGTTTATTGTTCATATGTCTCCCAATCTTGCCTCTAGGCTCTTAACCATAGCAAAAGAGATTGGAATGATGAATGAAGGTTATGTTTGGATTGTAACTGATAGCATGGCTAATGTATTATCATCCTCTTTGGATTCCCAACTCATCAAAGAATCAATGCAGGGAGTACTTGGTGTTAAGACTTATATTCCAAGAACAGAGGAGTTTGATGATTTTAAAGCTAGATGGAGAAGAAAATTCCTTCAAGAATATCCAACACTTGTTGATACAAAGTTGGATGCTTTTGGAGTGTGGGCCTATGATGCCACCATTGCATTAGCAATGGCTGTGGAGAAAGTTGGAGGAACCAACTTCAAGGGTTCAAGAAACATGAGTGGTCTTGGAAGTCTTGGAGTTTCTCAAAGTGGTGAAAAGCTAAGTGAGATTTTGTCAAGTACTAGATTCATTGGCCTCAGTGGAGAGATCAGTTTGATTGATGGGCAATTGCAAGCTTCCACCTTTGAGATAATCAATGTGAATGGCAATGGGGAAAGGAGGGTAGGGTTTTGGACATCACAGAATGGGTTAGTAAGGGATCTGAATGTAGCAAATACAAACACTACATATTCTGTTTCAAAGAACAATTTAGGACCCATTATTTGGCCAGGGGATACTTATTCTATTCCAAAAGGTTGGGAAGATCCAACAAATGCAAAGAAGTTAAAGATAGGAGTACCAGTGAGAAAAGGTTTCACTGAATTTGTGAAGGTTACTTGGAATCCCAATACTAATACATCAGAGGTAACTGGTTTCAGCATTGATGTTTTCAAGGCTGCATTGGAATTGTTGCCTTATGCCCTTCCATATGAATTCATCCCATTTGCAAAGGCTAATGGGGAGAGTGCTGGATCATACAATGAGTTGGTCAGCCAAGTTTATTTTGGGAACTTTGATGCTGTAGTGGGAGATCCAACAATTACTGCAAACAGATCCAAGTATGTGGACTTTACTATGCCATACACTGAATCAGGTGTAACTATGATTGTTCCATTGAAAGCAAACAAGCCAGGGAATGCATGGGCTTTCTTGAAGCCATTGACATGGAATCTTTGGGCAGCTACTGCTTTTTCCTTCATATTTGTTAGTTTTGTGGTTTGGGTCCTTGAACACCGTATAAATGAAGATTTTCGAGGTCCTCCTTTGCATCAAATTGGTACCAGCCTATGGTTTTCTTTCTCAGTGGTTGTCTTTGCCCATAGGGAGAAGGTAGTGAGCAACTTAGCTAGATTTGTTGTGATTGTATGGGTTTTTGTGGTACTGATATTGGTTCAAAGCTACACAGCAAGTTTGACTTCATTCTTAACAGTTCAGAAGCTTAGTCCAACTCTCACAAATGTGAATCAGCTTATGAAGAATGGGCTTAATGTTGGGTACCCTGAAGGTTCTTTTGTGTATGGGATGTTAAAGAACATGGGATTCCAAGATTTCCAGCTTAAACCTTATATTTCTACAGAAGAATGTGATGACCTCTTCACAAAAGGAAGTGGAAATGGTGGCATTGCTGCTGCTTTTGATGAAACCCCATATTTGAAGTTGATTCTTGAAACTTATTGCTCCAAGTATATCATGGTTGGTCCCACATTTAAAACTGATGGCTTTGGTTATGTTTTCCCTAGAGGTTCACCTTTAGTAGCTGACATTTCAAGGGCAATTTTGAATGTGACACAAGGAGACAGAATGAAAACAATTGAGAATGCATGGTTCAGGAAAAGCAATTGTCCAGATACTAATTCCTCAAATTCTGCAGACAATCTTGGCCTTAATAGCTTTTGGGGACTTTTCCTTATAGCAGGGGTTGCTTCAATTTCATCTCTCTTGATATTTGTAGTTAATTTCTTACATCATCACAGATATATATGGTTTCAGTCTAATTCTAACACTTCAATGAGTAAACGAATTGGTTCCATGCTTAGCATATTTGACCAAAAAGACCCGAGTTCCCATGCTTTCAGAAAGAAAATGATGCAAGGTGAAAGTGAAAATAGCAGCACTCATCATCATGGATTAGGAGGACAAGTTGTTGAGTCCTCTACAAGTACTCATTGCCCACCAAGTCCTTCTCCCTCAGGTCAAAGTCAAACGGAATCAAACTTCTCCTTTTATGGAGATCATGGAATGTTTTCTCCAGAGTACCATGGTGATGTTAATCTATATGGCCATGAACCTCATGACATGGAGATAACCATTGTGCAAAATGTTCCATCTACAACTCTGGAATTGGAAGCATCCCCTGCACAAAACTGA 2946 0.3951 MEKQRPKLIHSLILFWSLYSYVSMAQTVPVKVGIVVDVGGIYGKMGLSCINMAISDFYQTHSHYHTRLLFNVRDSQGDVVTAAAQALDLIKNEEVEAIIGPITSMEANFVIKLGEKTHVPIITFSATSPSLTSLRSQYSFRISQNDSSQVNAITSIIQAFGWKAIVPIYIDNDYGKGIIPFLTTSLQQVYIRIPYLSAISSSATDDDIREELYMLMTMQTRVFIVHMSPNLASRLLTIAKEIGMMNEGYVWIVTDSMANVLSSSLDSQLIKESMQGVLGVKTYIPRTEEFDDFKARWRRKFLQEYPTLVDTKLDAFGVWAYDATIALAMAVEKVGGTNFKGSRNMSGLGSLGVSQSGEKLSEILSSTRFIGLSGEISLIDGQLQASTFEIINVNGNGERRVGFWTSQNGLVRDLNVANTNTTYSVSKNNLGPIIWPGDTYSIPKGWEDPTNAKKLKIGVPVRKGFTEFVKVTWNPNTNTSEVTGFSIDVFKAALELLPYALPYEFIPFAKANGESAGSYNELVSQVYFGNFDAVVGDPTITANRSKYVDFTMPYTESGVTMIVPLKANKPGNAWAFLKPLTWNLWAATAFSFIFVSFVVWVLEHRINEDFRGPPLHQIGTSLWFSFSVVVFAHREKVVSNLARFVVIVWVFVVLILVQSYTASLTSFLTVQKLSPTLTNVNQLMKNGLNVGYPEGSFVYGMLKNMGFQDFQLKPYISTEECDDLFTKGSGNGGIAAAFDETPYLKLILETYCSKYIMVGPTFKTDGFGYVFPRGSPLVADISRAILNVTQGDRMKTIENAWFRKSNCPDTNSSNSADNLGLNSFWGLFLIAGVASISSLLIFVVNFLHHHRYIWFQSNSNTSMSKRIGSMLSIFDQKDPSSHAFRKKMMQGESENSSTHHHGLGGQVVESSTSTHCPPSPSPSGQSQTESNFSFYGDHGMFSPEYHGDVNLYGHEPHDMEITIVQNVPSTTLELEASPAQN. 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01119 981 FunFam Glutamate receptor 573 703 - -
Seca3g01119 981 Gene3D - 749 809 - -
Seca3g01119 981 FunFam Glutamate receptor 353 453 - -
Seca3g01119 981 Gene3D - 349 453 - -
Seca3g01119 981 Gene3D - 454 573 - -
Seca3g01119 981 Pfam Bacterial extracellular solute-binding proteins, family 3 478 803 IPR001638 -
Seca3g01119 981 SUPERFAMILY Periplasmic binding protein-like I 29 446 IPR028082 -
Seca3g01119 981 SUPERFAMILY Periplasmic binding protein-like II 433 804 - -
Seca3g01119 981 Pfam Receptor family ligand binding region 49 396 IPR001828 -
Seca3g01119 981 CDD PBP1_GABAb_receptor_plant 31 414 IPR044440 -
Seca3g01119 981 MobiDBLite consensus disorder prediction 895 933 - -
Seca3g01119 981 FunFam Glutamate receptor 149 311 - -
Seca3g01119 981 Gene3D - 147 313 - -
Seca3g01119 981 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 866 IPR015683 -
Seca3g01119 981 MobiDBLite consensus disorder prediction 886 933 - -
Seca3g01119 981 Pfam Ligand-gated ion channel 804 834 IPR001320 GO:0015276|GO:0016020
Seca3g01119 981 FunFam Glutamate receptor 2.7 710 809 - -
Seca3g01119 981 PIRSF IGluLR_plant 3 933 IPR017103 -
Seca3g01119 981 Gene3D - 574 697 - -
Seca3g01119 981 FunFam Glutamate receptor 450 572 - -
Seca3g01119 981 CDD GluR_Plant 453 802 - -
Seca3g01119 981 SMART GluR_14 454 804 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01119 Seca-Chr3 19347029 19352561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01119 26 893 Ion Channels AT2G29120 52.392 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01119 K05387 - cave:132185171 1090.49