Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01118 ATGGCACAAAGAAACGAGACAGTAGTAGTGAAAGTGGGAGCTGTGCTTGATCTTAGTAACGGAACGGTAGGGAAGATGGGGTTAAGTTGCATCAACATCTCCCTCTCAGATTTCTATCTCTCTCATTCTCATTACAAAACCAGACTCCAACTCATCGTCACGGACTCCCACATGGACGTCGTTACCGCCGCTGCTCAAGCTCTGGATCTTATAAAAAATGAAGAAGTGCAAGCTATCATAGGGCCAGTAACAACAATGGAGGCAGATTTTGTGATCAGGCTTGGAGACACAGCACATGTGCCCATTGTAACCTTTTCAGCAACAAGCCCTTCTCTTACTTCACTTCAGAGTCCATATTTTTTTCAAATTGCACAAAATGATTTAGCTCAAGTAAAAGTCATAACCACTTTTGTCCAAGCTTTTGGGTGGAAAGAAGTGGTTCTCATTCATGTAGACAATAGTTTTGGGGAAGGAGTCATTCCTAGCTTAACTAATGCTCTACAACAAGCCTATGTTCGAGTTCCCTATCTTAGTGCCATTTCTCTTTCAGCCACAGATGAAGCCATCACAATAGAGCTCTATAAGTTGATGAATATGCCAACCAGAGTCTTTCTTGTGCATATGTCACCAAGTCTTGGCTCTCGCCTCTTCACCATAGCAAGGCAAATTGGAATGATGGGCCAAGGCTATGTTTGGATCGTAACTGATGGAATGGCTAATTTCTTCAACTCTTTAAACTCCTCGGTCATGGAAGCAATGGAAGGAGTATTGGGTGCTAGGCCTTATGTTCCAAGAACAAAAGAGCTTGGTGATTTTAAAGCTCGATGGAAAAGAAAATTCCTACTAGACAATCCAACACTTGTTGATGTAAATTTGAACATTTTTGGAATATGGGCTTATGATGCTACCACATCATTAGCAATGGCTGTTGAGAATGTTGCAATTACCACCAACTTTGGCATTCAAGTGAGAAACACTTCAAGTAACCTGCTTGATCTTGAAAATTTTGGCATTGCACAAAATGGCGAAAAGTTGCGTGAAGCCCTGTCTAACACTAGATTCAGAGGGCTTAGTGGTGATTTTAATATTCTTGGTGGGCAATTACAAGCATCAGCTTTTGAGATAATTCAAGTAAATGGGGGTGGGGAAAGAAGGGTAGGATTTTGGACACCCCAAAAGGGGCTATCTCGAAATCTTGACACAAGAGGCCCAAGTATATATTCTACTTCTAAGAACAATCTTAGTCCCATTATATGGCCAGGGGATACATACTCCATTCCAAAGGGATGGGAAATTCCCACAAATGGAAGGAAATTGAGGATAGGAGTTCCAGTGAAAGATAAAAATAGTTATACTGAATTTGTGAAAATAACACCTGACCCTGTTACAAATTCAACAGTGGTCACCGGATTTTGCATTGATGTCTTCAAAGCTTTGCTAGATGTGTTGCCTTATGCCTTACCATATGAATTTATTCCATTTGCAAAGCCCAATGGTGAGATGGCAGGAAATTATAATGAGTTGGTCAGCCAAGTTTATTATGGGGTGTTTGATGCTGTCGTGGGGGATACAACGATTATTGCAAATAGGTCCAACTATGTTGATTTCACAATGCCGTACACAGAATCTGGTGTGACAATGGTTGTTCTAGTAAAAGACAATCGGAAGAAGAATGCGTGGGCCTTTTTGAAACCTCTTACATGGGATCTTTGGGTAACAACAACTTGTTCATTTGTGTTCATTGGATTTGTTGTTTGGGTCCTTGAACATCGAGTAAATAACAATTTTAGGGGACCTCCCTCGCATCAAATTGGCACAGGCTTATGGTTTTCTTTCTCAATCATGGTGTTTGCCCATAGGGAGAAAGTGATGAGCAACTTAGGTAGATTTGTGGTAATTGTATGGGTTTTTGTGGTTCTAATTTTGGTTCAAAGTTATACCGCGAGTCTCACTTCCCTCTTAACAGTTGAACAACTACGTCCAACTATTACAGATGTCAATCAACTCATCAAGAATAGGATGAATGTTGGTTATCTAAAAGGTTCTTTTGTTTATGGAATCTTGAAGGACTTAGGTTTCCAAGATTACCAACTCAAGACTTATGAATCCCCAGGAGAATGCAATGAGCTTTTCAGAAAAGGAACTACAAATGGTGGCATTGATGCGGCGTTTGATGAAATTCCTTACGTCAAGCACTTTCTTGGAATATATTGTTCCAAGTATGCCATGGTTGAACCCAGATTTAAAACTGGTGGCTTTGGTTATGTGTTCCCAAAAGGTTCCCCTATGGTAGCTGACATTTCAAGGGCGATCCTTAATGTGACTCAAGGAGACAAAATGAGAGCAATTGAGAATGCATGGTTCAAGGAAAGTAGTTGTGTGGAGTCTAATACAGAAATCTCCTCTAATAGTCTTGGCCTAGAAAGCTTTTGGGGTTTATTTCTTGTTGCAGGAATTGCTTCCCTATTAGCACTCCTAATCTTTGCATTGACTTTCTTATATCAACATAGGGATATTTGGCTACACAATAATCCTGATACTTCAATATGGAGACGTATTGGAATCTTGGTAAAGATATTCGATGAAAGAGACTCAAGTTGTCACACATTCAAGAAAAGTGAAATGCAAAATAGAAGTGAAACCACTAGTCCTCATCATAACTTAGGTGTAGTTGAGGCCTCCCCAAGTTCACACTTCCCACCTAGTCCATCTAGTCAAACTGAATCAAACTTTTGCTTTTATGAAGACTTTAGTCCAGACTATGGTGATGTTAAACCATAA 2781 0.4009 MAQRNETVVVKVGAVLDLSNGTVGKMGLSCINISLSDFYLSHSHYKTRLQLIVTDSHMDVVTAAAQALDLIKNEEVQAIIGPVTTMEADFVIRLGDTAHVPIVTFSATSPSLTSLQSPYFFQIAQNDLAQVKVITTFVQAFGWKEVVLIHVDNSFGEGVIPSLTNALQQAYVRVPYLSAISLSATDEAITIELYKLMNMPTRVFLVHMSPSLGSRLFTIARQIGMMGQGYVWIVTDGMANFFNSLNSSVMEAMEGVLGARPYVPRTKELGDFKARWKRKFLLDNPTLVDVNLNIFGIWAYDATTSLAMAVENVAITTNFGIQVRNTSSNLLDLENFGIAQNGEKLREALSNTRFRGLSGDFNILGGQLQASAFEIIQVNGGGERRVGFWTPQKGLSRNLDTRGPSIYSTSKNNLSPIIWPGDTYSIPKGWEIPTNGRKLRIGVPVKDKNSYTEFVKITPDPVTNSTVVTGFCIDVFKALLDVLPYALPYEFIPFAKPNGEMAGNYNELVSQVYYGVFDAVVGDTTIIANRSNYVDFTMPYTESGVTMVVLVKDNRKKNAWAFLKPLTWDLWVTTTCSFVFIGFVVWVLEHRVNNNFRGPPSHQIGTGLWFSFSIMVFAHREKVMSNLGRFVVIVWVFVVLILVQSYTASLTSLLTVEQLRPTITDVNQLIKNRMNVGYLKGSFVYGILKDLGFQDYQLKTYESPGECNELFRKGTTNGGIDAAFDEIPYVKHFLGIYCSKYAMVEPRFKTGGFGYVFPKGSPMVADISRAILNVTQGDKMRAIENAWFKESSCVESNTEISSNSLGLESFWGLFLVAGIASLLALLIFALTFLYQHRDIWLHNNPDTSIWRRIGILVKIFDERDSSCHTFKKSEMQNRSETTSPHHNLGVVEASPSSHFPPSPSSQTESNFCFYEDFSPDYGDVKP. 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01118 926 CDD GluR_Plant 437 788 - -
Seca3g01118 926 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 871 IPR015683 -
Seca3g01118 926 FunFam Glutamate receptor 559 689 - -
Seca3g01118 926 Gene3D - 343 442 - -
Seca3g01118 926 Pfam Ligand-gated ion channel 790 820 IPR001320 GO:0015276|GO:0016020
Seca3g01118 926 Gene3D - 559 688 - -
Seca3g01118 926 Gene3D - 129 289 - -
Seca3g01118 926 MobiDBLite consensus disorder prediction 897 911 - -
Seca3g01118 926 FunFam Glutamate receptor 438 559 - -
Seca3g01118 926 Pfam Bacterial extracellular solute-binding proteins, family 3 465 789 IPR001638 -
Seca3g01118 926 FunFam Glutamate receptor 338 437 - -
Seca3g01118 926 Gene3D - 689 795 - -
Seca3g01118 926 SMART GluR_14 440 790 IPR001320 GO:0015276|GO:0016020
Seca3g01118 926 FunFam Glutamate receptor 2.7 696 795 - -
Seca3g01118 926 PIRSF IGluLR_plant 1 910 IPR017103 -
Seca3g01118 926 SUPERFAMILY Periplasmic binding protein-like I 10 421 IPR028082 -
Seca3g01118 926 MobiDBLite consensus disorder prediction 871 911 - -
Seca3g01118 926 SUPERFAMILY Periplasmic binding protein-like II 417 791 - -
Seca3g01118 926 CDD PBP1_GABAb_receptor_plant 11 399 IPR044440 -
Seca3g01118 926 FunFam Glutamate receptor 126 281 - -
Seca3g01118 926 Gene3D - 445 558 - -
Seca3g01118 926 Pfam Receptor family ligand binding region 31 380 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01118 Seca-Chr3 19338692 19345049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01118 4 908 Ion Channels AT2G29120 51.047 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01118 K05387 - pvy:116139285 1124.38