Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01117 ATGAAGAATCATCATGTCTACTCTCCAATCATCATAATAATTATTTGGTCTCTAAGTTTCTTCTTGATAGGTATGGCACAGAGAAACGAGACAGTAGTGGTGAAAGTGGGAGCTGTGCTTGATCTTAGTAACGGAATGGTAGGGAAGATGGGGTTAAGTTGCATCAACATGTCCCTCTCAGATTTCTATCTCTCTCATTCTCATTACAAAACCAGGCTCCAACTCATCGTCAGGGACTCCAACAGGGACGTCGTTACCGCCGCTGCTCAAGCCCTGGATCTCGTAAAAAATGAAGAAGTGCAGGCTATCATAGGACCGATAACAACTATGGAGGCAGACTTTATGATCCGGCTTGGAGACAAAGCACATGTTCCAATTGTAACCTTTTCAGCAACAAGCCCTGCTCTTGCTTCGCTTCAAAGTCCATATTTTTTCCAAATCGCACAAGATGATTCGGCTCAAGTGAAAGCTATCACAACAATTATCCAAGCTTTTGGGTGGAAAGAAGTGGTTCTCATTTACATAGACGATAGTTTTGGGGAAGGAGTCATTCCTTTCTTAACCAATGCTCTCCAACAAGCCTATGTTCGAGTTCCCTATCTCAGTGTCATTTCTCTTTCAGCCACCAATGAAGTTATCACTGGAGAGCTTTATAAGTTAATGACTATGCCAACTAGAGTCTTTGTAGTGCACATGGTGCCACGCCTTGGCTCTCGCCTCTTCACCCTCGCGAAGCAAATTGGAATGATGGACCAAGGCTATGTTTGGATTGTAACTGATGGCATGACTAATTTGTTCAGCTCCTTAAACACTTCAGTCATGGAATCAATGGAAGGAGTATTGGGTGTGAGGCCTTATGTTCCAAGAACGAAAGAGCTTAATTATTTTAAAGCTCGATGGAAAAGAAAATTCTTACGAGATAATCCAACACTTGTTGACACAAATTTGAATGTTTTTGGAATATGGGCTTATGATACTACTACAGCATTAGCAATGGCAGTTGAGAAAGTTGGAACCACCAACTTTGGCTTCCACGTGAGCAATTCTTCAAGCAACATTCTTGGTTTTGAAAAGTTTGGCATTGCACAAAACGGTGAGAAGTTGCGTGAAGCCCTCTTGAACACTAGATTTAGAGGACTTGGTGGTGATTTCAATATTCTTGGTGGGAAGTTACAAGCATCAACTTATGAGATAATTAATATGGTTGGTAATGGGGAAAAGAGGGTGGGATTTTGGACGCCTAAAAAGGGACTATCTAGAAATCTTAACTCAAAAGAACCCAAAATATATTCTTCTTCAAAAAACAATCTTGGTCCCATTATATGGCCAGGGGATACATACTCTATTCCAAAAGGATGGGAAATTCCCATAAAAGGCAAGAAGTTGAGGATAGGAGTTCCGATAAAAGAAAAAGATAGTTATACTCAGTTTGTGAAAATAACGCTCGACCCAATTACCAATTCAACAGTGGTCACTGGATTTTGCATTGATGTCTTCAAAGCTGTGCTAGATGTGTTGCCATATGCCTTACCATATGAGTTCATTCCATTTGCAAAGCCCGATGGTGAGATGGCGGGAGATTATAATGAGTTAGTCAGCCAAGTTTATTATGGGGTATTTGACGCTGTGGTAGGGGATACAACGATTATTGGAAATAGGTCAAATTACGTTGATTTCACAATGCCATACACAGAATCTGGTGTGACAATGGTTGTTTTAGTAAAAGATAATAGGAAGAAAAACGCGTGGGCTTTTTTGAAACCACTAACATGGGATCTTTGGGTAACAACTACTTGTTCATTCATATTCATTGGATTTGTTGTCTGGGTCCTTGAACATCGAGTAAACAACAGCTTTAGGGGGCCTCCCTCACATCAAATTGGCACAAGCTTATGGTTTTCCTTCTCAATCATGGTGTTTTCCCATCGGGAGAAAGTGGTGAGCAACTTGGGTAGATTTGTGGTTATTGTATGGGTGTTTGTGGTTTTAATTTTGGTTCAAAGTTACACTGCGAGCCTCACTTCCCTCTTAACAGTTGAACAACTACGCCCAACTGTTACAGATGTCCATCAACTCATCAAGAATAGGATGAATGTTGGTTATCTAAAAGGTTCTTTTGTTTATGGAATTTTGAAAGACTTAGGTTTCCAAGATTTCCAACTCAAAATTTATGAATCTCCAGAAGAATGTAATGAGCTTTTCAAAAAAGGTAGTACAAATGGTGGCATTGATGCTGCGTTTGATGAAGTTCCTTATGTGAAGCACTTTCTTGGAACTTATTGTTCTAAGTATGTCATGGTTGAACCCAGGTTTCGGCTTTGGTTATATTCACAGGTGTTCCCAAAAGGTTCCCCTCTTGTGGCTGACATTTCAAGGGCAATCCTTAATGTGACTCAAGGAGACAAAATGAGAGCAATTGAGAATGCATGGTTCAAGGAAAGCAATTGTGTGGAGTCTAATACAGAAATTTCTTCTAAAAGTCTTGGCCTTGAAAGTTTTTGGGGTTTGTTTCTCGTTGCAGGGATTGCTTCCCTATTAGCACTCCTAATATTTGCATTAACATTCTTATATCAACATAGGCATATTTGGTTAAACAATAATCCTAATACTTCAATATGGAGACGTATTGGAATCTTGATAAGGATATTCGACCAAAGAGACTTGGACTGTCACACATTCAAGAAAAGTGAAATGCAAAATAAAAGTGAAACTAATAGTCCTCATCATGTATTAGGTGTAGTTGAGGCCTCGCCAAGTACACATTGCCCACAAAGTCCATCTAGTCAAACATTTCCTTTTATGGAGACTTTAGTTCAGACCAGGGTGCATGCTAAACCATAA 2841 0.3981 MKNHHVYSPIIIIIIWSLSFFLIGMAQRNETVVVKVGAVLDLSNGMVGKMGLSCINMSLSDFYLSHSHYKTRLQLIVRDSNRDVVTAAAQALDLVKNEEVQAIIGPITTMEADFMIRLGDKAHVPIVTFSATSPALASLQSPYFFQIAQDDSAQVKAITTIIQAFGWKEVVLIYIDDSFGEGVIPFLTNALQQAYVRVPYLSVISLSATNEVITGELYKLMTMPTRVFVVHMVPRLGSRLFTLAKQIGMMDQGYVWIVTDGMTNLFSSLNTSVMESMEGVLGVRPYVPRTKELNYFKARWKRKFLRDNPTLVDTNLNVFGIWAYDTTTALAMAVEKVGTTNFGFHVSNSSSNILGFEKFGIAQNGEKLREALLNTRFRGLGGDFNILGGKLQASTYEIINMVGNGEKRVGFWTPKKGLSRNLNSKEPKIYSSSKNNLGPIIWPGDTYSIPKGWEIPIKGKKLRIGVPIKEKDSYTQFVKITLDPITNSTVVTGFCIDVFKAVLDVLPYALPYEFIPFAKPDGEMAGDYNELVSQVYYGVFDAVVGDTTIIGNRSNYVDFTMPYTESGVTMVVLVKDNRKKNAWAFLKPLTWDLWVTTTCSFIFIGFVVWVLEHRVNNSFRGPPSHQIGTSLWFSFSIMVFSHREKVVSNLGRFVVIVWVFVVLILVQSYTASLTSLLTVEQLRPTVTDVHQLIKNRMNVGYLKGSFVYGILKDLGFQDFQLKIYESPEECNELFKKGSTNGGIDAAFDEVPYVKHFLGTYCSKYVMVEPRFRLWLYSQVFPKGSPLVADISRAILNVTQGDKMRAIENAWFKESNCVESNTEISSKSLGLESFWGLFLVAGIASLLALLIFALTFLYQHRHIWLNNNPNTSIWRRIGILIRIFDQRDLDCHTFKKSEMQNKSETNSPHHVLGVVEASPSTHCPQSPSSQTFPFMETLVQTRVHAKP. 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01117 946 Gene3D - 582 711 - -
Seca3g01117 946 Gene3D - 762 818 - -
Seca3g01117 946 Pfam Receptor family ligand binding region 54 404 IPR001828 -
Seca3g01117 946 CDD PBP1_GABAb_receptor_plant 35 422 IPR044440 -
Seca3g01117 946 Gene3D - 325 465 - -
Seca3g01117 946 FunFam Glutamate receptor 582 712 - -
Seca3g01117 946 SMART GluR_14 461 813 IPR001320 GO:0015276|GO:0016020
Seca3g01117 946 SUPERFAMILY Periplasmic binding protein-like I 33 444 IPR028082 -
Seca3g01117 946 FunFam Glutamate receptor 461 582 - -
Seca3g01117 946 Gene3D - 466 581 - -
Seca3g01117 946 PIRSF IGluLR_plant 4 938 IPR017103 -
Seca3g01117 946 Pfam Ligand-gated ion channel 813 843 IPR001320 GO:0015276|GO:0016020
Seca3g01117 946 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 894 IPR015683 -
Seca3g01117 946 FunFam Glutamate receptor 156 314 - -
Seca3g01117 946 Pfam Bacterial extracellular solute-binding proteins, family 3 488 812 IPR001638 -
Seca3g01117 946 Gene3D - 152 316 - -
Seca3g01117 946 SUPERFAMILY Periplasmic binding protein-like II 440 814 - -
Seca3g01117 946 CDD GluR_Plant 460 811 - -
Seca3g01117 946 FunFam Glutamate receptor 325 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01117 Seca-Chr3 19315416 19320788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01117 14 941 Ion Channels AT2G29120 50.589 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01117 K05387 - tcc:18507124 1129.78