Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01105 ATGGCCTCTAAGCTCTGCGATTACTGCAAGTCCGCCACAGCGACGCTCTACTGCCGCCCTGACTCCGCCTTCCTCTGCGGCGCCTGTGACTCCAAGGTCCACGCCGCCAACAAACTCGCCTCCCGTCATCCACGTGTCTCTCTCTGTGAAGTCTGTGAACAAGCCCCTGCTCACGTCACCTGTAAGGCTGACGCCGCTTCCCTCTGCCTCGCCTGTGACCAAGACATCCACTCTGCTAACCCTCTCGCTAGCCGCCACGAGCGTTTCCCTGTCACTCCAATCTTCGAATCCGTTCACTCCGTCAAGTCATCCTCCACCGCTAACTTCCTCGATCACCACCACTTCTTCTCCGATGATGCAGATGCAGACGCAGAAGAGGCCGAGGCCGCTTCCTGGTTGCTTCCAGCACCTAAGGCAGATCTGTTCTCCGAAAACGAACCTCTTACCTTCATAGATCTGGATTACGGTCTTGATCCCAAAGCTGAACAGAAAAGCGACGGAGTGGTTCCTGTACAGAGCAACTTCGCTTATGGCTACAATCACAATTTCCAGTCACATTCACAGTCACAATCTCAGTCTCAGATGAGCCATAGTAATGTTCAGGTATCATCTTCGTCGATGGAGGTTGGGGTTGTGCCGGATGGGAGCACCGCATCGGAGATATCGAACTGCAGCTATGGCAAGGCGGTGGATAGGGAAGCGAGGGTGTTGAGGTACAGAGAGAAGAGGAAGAATCGAAGGTTCGAGAAGACTATTCGTTACGCTTCACGGAAAGCCTATGCGGAAACCAGACCTAGAATCAAAGGCAGGTTCGCCAAACGCTCTGATGCCGTCGTCGAACATCTTGGTGGATACGGCGTCGTTCCCACCTGTTAA 876 0.54 MASKLCDYCKSATATLYCRPDSAFLCGACDSKVHAANKLASRHPRVSLCEVCEQAPAHVTCKADAASLCLACDQDIHSANPLASRHERFPVTPIFESVHSVKSSSTANFLDHHHFFSDDADADAEEAEAASWLLPAPKADLFSENEPLTFIDLDYGLDPKAEQKSDGVVPVQSNFAYGYNHNFQSHSQSQSQSQMSHSNVQVSSSSMEVGVVPDGSTASEISNCSYGKAVDREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDAVVEHLGGYGVVPTC. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01105 291 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Seca3g01105 291 Pfam B-box zinc finger 47 90 IPR000315 GO:0008270
Seca3g01105 291 CDD Bbox1_BBX-like 5 48 - -
Seca3g01105 291 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Seca3g01105 291 SMART bboxneu5 1 48 IPR000315 GO:0008270
Seca3g01105 291 SMART bboxneu5 49 91 IPR000315 GO:0008270
Seca3g01105 291 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Seca3g01105 291 ProSiteProfiles CCT domain profile. 232 274 IPR010402 GO:0005515
Seca3g01105 291 Pfam CCT motif 232 274 IPR010402 GO:0005515
Seca3g01105 291 CDD Bbox1_BBX-like 48 91 - -
Seca3g01105 291 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 277 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01105 Seca-Chr3 19036943 19038261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01105 1 290 C2C2-CO-like Transcription Factor Family AT5G24930 50.546 1.50e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca3g01105 zf-B_box 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01105 - - gmx:100804201 404.06