Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01096 ATGAAGATAGCAGTGGAAGGGTGTATGCATGGCGATCTGGACAATGTGTACAAAACCCTTCAACATCTTGAGAAATCACAGAACACGAAAATCGACCTCCTCCTCTGCTGCGGCGATTTTCAGGCCGTGAGGAACAAGAACGATTTGAAGAGCTTGAACGTTCCACCGCGCTATCGCTCCATGAATTCCTTCTGGAAGTACTATTCTGGGTTGGAGGTTGCCCCCTATCCCACCATCTTCATCGGTGGCAACCACGAAGCATCCAATTACCTCTGGGAACTGTACTATGGAGGATGGGCTGCGCCTAATATTTACTTCTTGGGAGCTGCTGGGGTGATAAGGTTTGGGAATATCCGAATTGGTGGGCTATCTGGAATTTATAATGCTCGTCACTATAAATTAGGACACTTTGAGAGGCCTCCATATGATCAGAATACCATCAGGTCTGCGTATCATGTTCGCGAATATGATGTTCACAAACTCAGTCAAATTGAGGAACCTATTGATATTTTTCTCTCACATGATTGGCCTGTGACAATCACTGATTATGGAGATTGGAAGGAGCTTGTTCGGAAGAAGCATTATTTTAAGCAAGAGATAGAGGAGAAAAGACTTGGGAGCAAAGCTGCTGCTCAACTTCTAGAACAATTGAAACCACAATATTGGTTTTCAGCTCACTTACACTGCAAGTTTGCTGCCCTTGTTCAACACGGGGAAGGAGGTCCACTGACAAAATTCCTAGCACTTGATAAATGTCTTCCTGGGCGTGATTTCTTACAGATCGTGGAAATTGAATCAGAGGCAGGACCTTATGAGATTCAGTATGATGAAGAATGGCTAGCGATAACAAGGAGGTTCAACTCTATCCTCCCTCTGACAACCAAAGGTGCAGATTTTGGAGGTGTGAATCTTGAGATGGAAGATTGTCGCGAATGGGTTAGAAGCAAGCTACGAGAGAGGGGATGCAAACCTTTTGAGTTTGTTAGAACAGCTCCATGTTATGATCCTTCTCAATCCAATTCTGATGGTGCTTTTGCTGTGAATCCTCGGAATCCTCAGACAGAATCTCTTTTGCAGCTTCTAGAACTTCCGTATCTTCTTGATAGCAATCCTGAAGCAAAAGACTCATCACCTTATCCTTCTCCTTCAATTCAAAAAGGCGCCGTTTTTGATAGCGAGGACATTCCAATCGATGATGTGGATGATGATGATGCAATCTCTTCTCTTTTTATCTTTTCATTCGCTGCTTCTATTACAGCTAGCCTCTCTTTCAACTTCTATGCAGCTTCATGCCCAACAGCAGAGCTTCTCATAAGAAACACAGTCAGTTCATCCACTTCTAATGATCCTTCCATTCCTGGAAAGCTCCTTCGCCTTGTTTTCCATGATTGCTTCGTGGAGGGTTGTGATGCATCTTTGATGCTACAAGGGAATAATACAGAACAAAATGATCCAGGGAATAGGTCTGTTGGAGGATTTTCAGTTATAGAATCAGCAAAAAGAGTCCTTGAATTTTTCTGCCCTGGAACTGTTTCTTGTGCAGACATAATTGCTCTAGCTTCTAGAGATGCTGTTGAAATTGCTGGTGGACCAAGGATTCAGATTCCTACAGGTAGGAGAGATGGGATGGTTTCAGTTGCTTCAAATGTCAGACCAAACATTGCGGACACCATCTTCACTATGGATGAGATGGTTAAGCTCTTTTCCACTAAAGGATTATCCTTGCTTGATCTTGTCGTCCTTTCAGGAGCTCATACCATAGGAACAGCTCATTGCAACACATTCAGGGGTCGTTTCCAAGAAGACTCAAATGGAAAGCTTAGGCTTATTGATCAAACCCTTGACAGTAGCTATGCTAATAAGCTAATAGAACAGTGTCCAGCAGATGCACTACCATCTGTAACAGTGAACAATGATCCTGAAACATCTATGGTCTTTGACAATCAGTACTACCGAAATCTTCTGGCTCACAAAGGGCTATTCCAGTCAGATTCTGTTTTATTAAACGATGATAGCACGAGGAAGATAGTGGAGGATTTTGCAAATGATCAAAACCTTTTCTTTGAAAACTGGGGTGTGTCCTTCATGAAGCTCACCAGTGTCGGAGTCAAAACAGGGGATGAGGGTGAAATTCGACGTACTTGTGCAGCAACTAATGCTTAA 2163 0.4309 MKIAVEGCMHGDLDNVYKTLQHLEKSQNTKIDLLLCCGDFQAVRNKNDLKSLNVPPRYRSMNSFWKYYSGLEVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGAAGVIRFGNIRIGGLSGIYNARHYKLGHFERPPYDQNTIRSAYHVREYDVHKLSQIEEPIDIFLSHDWPVTITDYGDWKELVRKKHYFKQEIEEKRLGSKAAAQLLEQLKPQYWFSAHLHCKFAALVQHGEGGPLTKFLALDKCLPGRDFLQIVEIESEAGPYEIQYDEEWLAITRRFNSILPLTTKGADFGGVNLEMEDCREWVRSKLRERGCKPFEFVRTAPCYDPSQSNSDGAFAVNPRNPQTESLLQLLELPYLLDSNPEAKDSSPYPSPSIQKGAVFDSEDIPIDDVDDDDAISSLFIFSFAASITASLSFNFYAASCPTAELLIRNTVSSSTSNDPSIPGKLLRLVFHDCFVEGCDASLMLQGNNTEQNDPGNRSVGGFSVIESAKRVLEFFCPGTVSCADIIALASRDAVEIAGGPRIQIPTGRRDGMVSVASNVRPNIADTIFTMDEMVKLFSTKGLSLLDLVVLSGAHTIGTAHCNTFRGRFQEDSNGKLRLIDQTLDSSYANKLIEQCPADALPSVTVNNDPETSMVFDNQYYRNLLAHKGLFQSDSVLLNDDSTRKIVEDFANDQNLFFENWGVSFMKLTSVGVKTGDEGEIRRTCAATNA. 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01096 720 PRINTS Haem peroxidase superfamily signature 639 654 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 PRINTS Haem peroxidase superfamily signature 453 467 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 PRINTS Haem peroxidase superfamily signature 511 528 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 PRINTS Haem peroxidase superfamily signature 577 592 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 PRINTS Haem peroxidase superfamily signature 529 541 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 CDD secretory_peroxidase 422 718 IPR033905 GO:0004601|GO:0042744
Seca3g01096 720 Gene3D Peroxidase, domain 2 555 698 - -
Seca3g01096 720 Pfam Lariat debranching enzyme, C-terminal domain 244 364 IPR007708 GO:0006397|GO:0016788
Seca3g01096 720 ProSitePatterns Peroxidases proximal heme-ligand signature. 577 587 IPR019793 -
Seca3g01096 720 PRINTS Plant peroxidase signature 637 652 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 PRINTS Plant peroxidase signature 431 450 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 PRINTS Plant peroxidase signature 455 475 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 PRINTS Plant peroxidase signature 491 504 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 PRINTS Plant peroxidase signature 576 588 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 PRINTS Plant peroxidase signature 653 670 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 PRINTS Plant peroxidase signature 529 544 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 PRINTS Plant peroxidase signature 693 706 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 PRINTS Plant peroxidase signature 510 520 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 Pfam Calcineurin-like phosphoesterase 1 229 IPR004843 GO:0016787
Seca3g01096 720 SUPERFAMILY Heme-dependent peroxidases 422 719 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 SUPERFAMILY Metallo-dependent phosphatases 1 251 IPR029052 -
Seca3g01096 720 FunFam Peroxidase 425 565 - -
Seca3g01096 720 CDD MPP_Dbr1_N 3 259 IPR041816 -
Seca3g01096 720 PANTHER RNA LARIAT DEBRANCHING ENZYME 1 405 - -
Seca3g01096 720 FunFam Peroxidase 555 698 - -
Seca3g01096 720 Gene3D - 8 244 IPR029052 -
Seca3g01096 720 Gene3D - 425 719 - -
Seca3g01096 720 SMART DBR1_2 235 367 IPR007708 GO:0006397|GO:0016788
Seca3g01096 720 FunFam Lariat debranching enzyme 9 251 - -
Seca3g01096 720 Pfam Peroxidase 439 683 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca3g01096 720 ProSiteProfiles Plant heme peroxidase family profile. 421 719 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01096 Seca-Chr3 18592400 18605486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01096 409 719 Peroxidase AT4G31760 63.344 9.26e-146 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01096 K18328 - cave:132189503 1072.77