Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01065 ATGGGCTGTTGCCAATCTAACCTCTCCAAATATTCAACTCCTCATCAACACAGCAGCGTTGTCGTTGATAACGTTGCCTCTTCCTCCAACGGCGCCGAAAATGCAGTAGGCGTGCCGGCGTTCTCGGAGTTCTCACTCTCAGACCTCAAAGCCGCCACCAACGGCTTCAGCTCCGATCACATAGTCTCTGAGAGCGGCGAGAAAGCCCCCAATGTAGTCTACAAAGGTCGTCTCCAGAACCATAACCGTCGCTGGATTGCAGTTAAGCGGTTTTCTAAATTGGCCTGGCCCGATCCCAAGCAGTTCGCTGATGAAGCTTGGGGTGTTGGGAAATTACGACACCGGAGGCTTGCTAATTTGATTGGTTATTGCTGTGATGGAGATGAGAGGCTCCTTGTTGCAGAATACATGCCCAATGACACTCTCGCCAAACATCTTTTCCACTGGGAAAATCAGACAATTGAGTGGGACATGCGGTTAAGAGTTGCCCTATCTATCACTGAAGCATTAGATTATTGTAGTAACAAAGGTTATCCATTGTACCATGACTTGAATGCTTACAGAGTTTTATTTGATGAGAATGGCGATCCCCGGCTTTCATGTTTTGGTTTGATTAAGAACAGCAGGGACGGGAAAAGTTATAGCACAAATCTTGCTTATACACCTCCTGAGTATCTGAGAAATGGTGGTTGCATGTTTTCTGTAATTCTCTTCTGGGTAACAGCTATAATATATGTATTGTTTGTAGGGAGGGTGACTCCAGAAAGTGTTATCTTCAGCTTCGGGACTGTGTTACTGGATCTTCTAAGTGGCAAGCATATCCCTCCAAGTCATGCACTTGACATGATAAGAGGTAAAAATATTCGACTCCTCATGGATTCACATTTGGAGGGAAACTTTTCAACGGAAGAGGCAACTGTGGTTTTTGATCTTGCTTCACAATGTTTGCAGTATGAACCTCGGGAGCGGCCCAAGGCCAAGGACCTAGTTACAACACTTTCTACACTACAAACTAAACCCGATGTGAGCTTTTGA 1035 0.4551 MGCCQSNLSKYSTPHQHSSVVVDNVASSSNGAENAVGVPAFSEFSLSDLKAATNGFSSDHIVSESGEKAPNVVYKGRLQNHNRRWIAVKRFSKLAWPDPKQFADEAWGVGKLRHRRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWDMRLRVALSITEALDYCSNKGYPLYHDLNAYRVLFDENGDPRLSCFGLIKNSRDGKSYSTNLAYTPPEYLRNGGCMFSVILFWVTAIIYVLFVGRVTPESVIFSFGTVLLDLLSGKHIPPSHALDMIRGKNIRLLMDSHLEGNFSTEEATVVFDLASQCLQYEPRERPKAKDLVTTLSTLQTKPDVSF. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01065 344 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 2 343 IPR045845 GO:0004672|GO:0009742
Seca3g01065 344 Gene3D Transferase(Phosphotransferase) domain 1 138 343 - -
Seca3g01065 344 SUPERFAMILY Protein kinase-like (PK-like) 37 337 IPR011009 -
Seca3g01065 344 ProSiteProfiles Protein kinase domain profile. 59 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01065 344 Gene3D Phosphorylase Kinase; domain 1 31 136 - -
Seca3g01065 344 FunFam probable serine/threonine-protein kinase At4g35230 31 136 - -
Seca3g01065 344 Pfam Protein tyrosine and serine/threonine kinase 72 333 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01065 Seca-Chr3 18180884 18183969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01065 40 344 Glycoside Hydrolase AT3G07070 32.229 2.01e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca3g01065 PK_Tyr_Ser-Thr 5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01065 K14500 - mnt:21407610 533.102