Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01049 ATGTCGACGGCGGTGGTAAGAACCAATGGCTGCGGTGGTGGTGGTGACGAGGGGAAGCACTATCCTCCCCCACTTGCCTCTCACGAGGACATAGTTAATGCTTCTACACTCTTCTGGGACACTCTCAAGCAATTTCACTTCATTATGGGTACCAAATTCATGATTCCTGTGATTGGAGGAAAGGAACTGGACTTGCACGTTCTCTACGTGGAGGTTACGAGGCGAAGCGGTTACGAGAAGGTTGTTGCAGAGAAAAAATGGAGGGAAGTTGGTAGTGTATTCAGATTCTCAGCTACTACCACAAGTGCTTCTTTTGTACTGAGGAAACATTACTTCAATCTTCTCTTCCATTATGAGCAAGTTCACTTCTTCAAGGTTCGGGGACCTCTCTACACTCCATCACCAGATGCATTTTCTGGCAACAGCCCTTCGTGGAGACCTGAATTAGCTATTGTTGAATACACACCTAAGCAAACAAACCATACTCCTGAATCCCCCCATGCTGAAGTGGCCATAGATACTTCATGTCTCTCAGGATATGGAACAATAGAAGGAAAATTTGATTGTGGCTATTTAGTGTCCGTGAAATTGGGTTCGGAGGTTCTTAGAGGTGTGCTTTACCATCCAGAACAATTGGCTCCTCCTCCTTCTGTTGCAGTTCCGCAACAGGACCATGCTACCGGAAGATACAATCGAAGACGTGGCCGCTCTGCTCGGAGAAGGAAAAACAAAAGAAGGTGGGACCCCAATTACCCAAAGCCAAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAACATTACAAGCTGAAAGAACTCTACCCAAACAGAGAAAGAGAGTTCACCAAAATGATTGGCGAGTCCTGGAATAATCTTAGCCCTGAAGAAAGAAAGGTAGTTTATCAGAATATTGGCCTAAGGGACAAAGAAAGATATAAAAGAGAATTGACGGAGTACAAAGAGAAAATGAAGCTTAGGCAGACTGAAGAAGATGGAGGTCCATAA 1005 0.4468 MSTAVVRTNGCGGGGDEGKHYPPPLASHEDIVNASTLFWDTLKQFHFIMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFRFSATTTSASFVLRKHYFNLLFHYEQVHFFKVRGPLYTPSPDAFSGNSPSWRPELAIVEYTPKQTNHTPESPHAEVAIDTSCLSGYGTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQLAPPPSVAVPQQDHATGRYNRRRGRSARRRKNKRRWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGESWNNLSPEERKVVYQNIGLRDKERYKRELTEYKEKMKLRQTEEDGGP. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01049 334 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 17 328 - -
Seca3g01049 334 Gene3D - 25 127 IPR036431 GO:0003677
Seca3g01049 334 MobiDBLite consensus disorder prediction 232 247 - -
Seca3g01049 334 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 252 320 IPR009071 -
Seca3g01049 334 SUPERFAMILY ARID-like 33 130 IPR036431 GO:0003677
Seca3g01049 334 Pfam ARID/BRIGHT DNA binding domain 37 119 IPR001606 GO:0003677
Seca3g01049 334 SMART ARID_2 29 119 - -
Seca3g01049 334 SMART bright_3 33 124 IPR001606 GO:0003677
Seca3g01049 334 ProSiteProfiles ARID domain profile. 32 123 IPR001606 GO:0003677
Seca3g01049 334 MobiDBLite consensus disorder prediction 213 252 - -
Seca3g01049 334 SUPERFAMILY HMG-box 249 323 IPR036910 -
Seca3g01049 334 CDD HMG-box_AtHMGB9-like 252 319 - -
Seca3g01049 334 Coils Coil 309 329 - -
Seca3g01049 334 Pfam HMG (high mobility group) box 252 320 IPR009071 -
Seca3g01049 334 SMART hmgende2 251 321 IPR009071 -
Seca3g01049 334 CDD ARID_HMGB9-like 37 119 IPR045303 GO:0003677
Seca3g01049 334 Gene3D High mobility group box domain 235 332 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01049 Seca-Chr3 17877573 17880688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01049 19 333 ARID Transcription Factor Family AT1G76110 64.596 2.68e-133 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca3g01049 ARID 8.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01049 - - gmx:100784746 533.487