Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01048 ATGGGAGATACAGAGAGTTGCAGTAGCAGAGTTTTCAGTTCTGGATGGAATCAAAGCCGAAAACAGAGGCACAAGGTTGTGGTTTACGACGAGGTTCTTAGTCGATTAAGGGAATTGAATGTGCCAGAGGCTTTGGTTCCAGGTTTTGAAGATGAACTTTGGGAGCATTTTTTTCGCCTTCCCACTAGGTATGCGTTGGATATGAATGTGGAGAGGGCCCAAGATGTTCTTATGCATAAAAGATTGCTGCACATTGCACGAGCCTCAACTACAGTAACCGGACCTGCGGTTGAAGTCCGTCTTGTACAGGTTTGTTCTGCTTCTGATGTGCGTTGTAGTACAGCCCTTCATTCAAACTCACAAAGTAAAGTTAGTCATCAAGATTCTGATATTCCAGGCAACATGAGCTTCCATCCTCCCCCAACTTTTGGTTCATCATCTAACGTGGAGCTTGCTCTTGGTGTGAGCCAGTTACAAGTTCGAGATAGGGATAACTATTTGAATTTTTATGCACACTATGCCCGGCCTATGCATGAAATCACAGTTTCAACAAATGACAAGCCAAAACTTCTCAGTCAGTTGACTTCCTTACTCTCTGAGACTGGGCTGGACATTCAAGAAGCACATGCTTTTTCCACATTGGATGGATATTCATTGGATGTTTTTGTTGTTGGTGGTTGGGAAGTGGAGAAGACAGAGGAGTTAAAGCATGTATTAGCAGAGAAACTTCAGAAGCAACCTCAGTTGAAAGAAAATGGCAGGCTTCCTCTTGCAGAGCAAGAGCAAATCGGGATGAACTTCATCTCTAGACATGTAAATTTGCCCAATTGTGAAAATGATGTCTCGAAAATCAATGCATGGTGTTTGAGATATGAAAAGAAAATTGCATCTGGTCCTTTCAGTGACCTGTATAAAGGTACGTTCTGTAATAAAGATGTGGCTATCAAAGTCCTTAAGGATGAAAATTTGAATGAAAATATACAGAGGGAGTTTACTCAGGAAGTCTACATTCTAAGTAAGATTCAGCACAAGAATATTGTCAAATTTGTTGGCGCTTGTACAAAACCCCCAAACCTTTACCTTGTCACGGAATATTTGCCTGGTGGAAGTATATATGACTTTCTGCATATACGGAAAACCGTCCTTACTCTTCCATCTTTGCTCAAAGTAGCTATTGATATTTCCGAAGGAATGAAATATTTGCATCAGAATGATATCATACATCGGGACCTCAAGACAGCTAATCTTTTGATAGATGAGAATGGCGTAGTCAAGGTTGCTGATTTTGGTGTAGCCAGAGTGTATGATCAGGCTGGTATCATGACTGCAGAAACTGGAACTTATCGGTGGATGGCTCCAGAGGCATGGATGAGGCAGTTTAAGACGAACCTAGACAAGTTGGAATGA 1407 0.4165 MGDTESCSSRVFSSGWNQSRKQRHKVVVYDEVLSRLRELNVPEALVPGFEDELWEHFFRLPTRYALDMNVERAQDVLMHKRLLHIARASTTVTGPAVEVRLVQVCSASDVRCSTALHSNSQSKVSHQDSDIPGNMSFHPPPTFGSSSNVELALGVSQLQVRDRDNYLNFYAHYARPMHEITVSTNDKPKLLSQLTSLLSETGLDIQEAHAFSTLDGYSLDVFVVGGWEVEKTEELKHVLAEKLQKQPQLKENGRLPLAEQEQIGMNFISRHVNLPNCENDVSKINAWCLRYEKKIASGPFSDLYKGTFCNKDVAIKVLKDENLNENIQREFTQEVYILSKIQHKNIVKFVGACTKPPNLYLVTEYLPGGSIYDFLHIRKTVLTLPSLLKVAIDISEGMKYLHQNDIIHRDLKTANLLIDENGVVKVADFGVARVYDQAGIMTAETGTYRWMAPEAWMRQFKTNLDKLE. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01048 468 Gene3D Transferase(Phosphotransferase) domain 1 366 465 - -
Seca3g01048 468 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 124 456 - -
Seca3g01048 468 Pfam Protein tyrosine and serine/threonine kinase 290 459 IPR001245 GO:0004672|GO:0006468
Seca3g01048 468 SUPERFAMILY ACT-like 177 242 IPR045865 -
Seca3g01048 468 SUPERFAMILY Protein kinase-like (PK-like) 282 459 IPR011009 -
Seca3g01048 468 ProSiteProfiles ACT domain profile. 179 257 IPR002912 -
Seca3g01048 468 CDD STKc_MAP3K-like 295 459 - -
Seca3g01048 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Seca3g01048 468 Gene3D Phosphorylase Kinase; domain 1 279 365 - -
Seca3g01048 468 FunFam Serine/threonine-protein kinase isoform 1 279 367 - -
Seca3g01048 468 SMART serkin_6 289 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01048 468 ProSiteProfiles Protein kinase domain profile. 289 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01048 Seca-Chr3 17855834 17865325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01048 1 454 MAP Kinase Kinase Kinase AT4G38470 56.344 4.76e-171 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca3g01048 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01048 - - gmx:100818047 707.597