Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01047 ATGGCCCAAAAAGAAGAAGTTGTGGTTGATTTAGAATCAAAAGTTAGTGGTTGCGGTCCAAGTGACAAACTTGAAGACATGCAGGAAAATCCCAAAGGTGAGTCTACACAAAAGATGAAGCAAGATCATCAAAACCAAGAAAACCAACAACAATCCACATATTCAGGAGAAAACGTTGTGAAATCCACTTCAAATGATTCAAGTCAACGATACTCATGGAAATCAGCAATGAGCAGAACAAAGTCAAGGCTAATTGACCCACCAGAGGAATCATGTGCAAGTTCAGAGTCTAAAAAGCAGAGAGTACCAGAGGATTATGAAGATGAAGATAATGATCTCGAAATGGATTATGTTGAGGACATGCCAAAACTTTGCAAGAGAACAAGGCTCAACGCATTCTCAATACTTCAATGGATTTGTCTTGCTTCAATAGTAATAGCCTTAGTTTCTAACCTTTGGATTTCTTACTTACAAAAGGTTATACTTTGGAGCCTTCCCTTGTGGGAATGGGAGATAATGATTTTGGTACTAATTTGTGGACGTTTACTTTCAAGTTGGGTAATTAAGGTAATTGTGTTTTTTGTGGAACGCAATTTTATACTAAGAAAACGTGTGTTGTATTTTGTGTATGGGTTGAAGCATTCTGTGAAGAATTGTGACTGGTTGGGTTTGGTTTTGCTTGTTTGGCACTTTATTTTGGTGCAAAAGAAGATTAACCACAAGATTTTGTGGTATGTGACAAAAGCTTTGGTGTGTCTTTTCACGGGTACTCTTATATGGCTTGTGAAAACCATACTTGTTAAGGTCTTTGCTTTGCACTTCCACGTGAGAACTTTCTTTGAACGGATTCGAGAGGCTCTGTTCAGTCAATATGTGATAGAAACGTTGTCTTGTCCACCGTTGATAGAACAGGAAGCTGATGATTTTGAACCGTCGATTTCTGTGAGAAGCTTGAGACTTGGTAGGAGGGTGAGAATGCAAAAGAGTGGCACCACTAATACTATTGTGAAGTTGAAGGAAGATGAAGAGATGGCAATTGAGAAATTGCGTAAGTTGAATAAGAGGAATATATCGGCTTGGAATATGAAGAGGATGATTAACATCATCATGCATGGGGCATTTACAACACTGGATGAGCATTTAGGAAATTCAAATAGTGAGGATGAGATTTTGCTGCAAATTAGAAGTGAATTCCAGGCAAAGCAGGCTGCTCAGACAATATTCCGGAACGTGGCACAACCAGGATCCCAATATATTTTTGTCCAAGATGTGATGCAGTTTATGCGAAAAGATGAAGCTTTGAAGACAATGGATCTGTTAGGAGCAACGTGTACAAACCAGGGCATTAGCATGTCCTCTCTGAGAGAATGGATGGTGAAAGCATATAGAGAGAGAAAGGCACTAGCATTATCACTAAAAGACACAAAAACTGCTGTAGATGAGCTCCATAATATGTTGAACATCATTATTGGTATTGTTATTTTGGTAGTTTGGCTTGTTATACTTGGAACACCCATCCTACACTTTTTTGTCTTCATCAGATCCCAGATTTTAGTGGCAGTATTTGTGTTCAGGAATACCTGTAGGACTGTCTTTGAAGCAATCATCTTCTTATTTGTAATGCATCCATTTGATGTTGGTGATCGTTGTGAGGTAGATGGACATCAGATGATAGTGGAAGAGATGAATATACTAACAACAGTGTTTTTGAAGTATGATAACCAAAAGGTTACATATCCAAACAGTGTTCTAGCTACCAAGCCCATCAGTAATTATCAACGTAGTCCTGATATGGGTGATGCAGTTGATTTCTGTATCCATATCTCCACTCCATTAGATAAAGTTGCCACTATGAAAAAAAGAATTATAGAGTACATTGAAAGGAAGAATGAGCAGTGGCATGAGGCTCCAGTGGTGATGATGAAGGATGTGGAAGACATGAACAAGTTGAACATGTCAGTGTGGCTTACACACAAAATGAATTATCAGGACATAAAAGAAAGATGGTGCAGGAGAGCCCAATTGATTGAAGAGATGATCAAAGTGTTTAGGGAACTTGATATTGAATACAGGCTTCTCCCTCTTGATGTCAATGTCCAATATATGCCCCCTCTGCATTTGAATAGGCTTCCATCGAATTGGAACACTTGTGCCAGCTCTCTTTAA 2166 0.3873 MAQKEEVVVDLESKVSGCGPSDKLEDMQENPKGESTQKMKQDHQNQENQQQSTYSGENVVKSTSNDSSQRYSWKSAMSRTKSRLIDPPEESCASSESKKQRVPEDYEDEDNDLEMDYVEDMPKLCKRTRLNAFSILQWICLASIVIALVSNLWISYLQKVILWSLPLWEWEIMILVLICGRLLSSWVIKVIVFFVERNFILRKRVLYFVYGLKHSVKNCDWLGLVLLVWHFILVQKKINHKILWYVTKALVCLFTGTLIWLVKTILVKVFALHFHVRTFFERIREALFSQYVIETLSCPPLIEQEADDFEPSISVRSLRLGRRVRMQKSGTTNTIVKLKEDEEMAIEKLRKLNKRNISAWNMKRMINIIMHGAFTTLDEHLGNSNSEDEILLQIRSEFQAKQAAQTIFRNVAQPGSQYIFVQDVMQFMRKDEALKTMDLLGATCTNQGISMSSLREWMVKAYRERKALALSLKDTKTAVDELHNMLNIIIGIVILVVWLVILGTPILHFFVFIRSQILVAVFVFRNTCRTVFEAIIFLFVMHPFDVGDRCEVDGHQMIVEEMNILTTVFLKYDNQKVTYPNSVLATKPISNYQRSPDMGDAVDFCIHISTPLDKVATMKKRIIEYIERKNEQWHEAPVVMMKDVEDMNKLNMSVWLTHKMNYQDIKERWCRRAQLIEEMIKVFRELDIEYRLLPLDVNVQYMPPLHLNRLPSNWNTCASSL. 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01047 721 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 27 714 IPR016688 -
Seca3g01047 721 MobiDBLite consensus disorder prediction 25 41 - -
Seca3g01047 721 FunFam Predicted mechanosensitive ion channel 543 592 - -
Seca3g01047 721 MobiDBLite consensus disorder prediction 1 107 - -
Seca3g01047 721 PIRSF Memb_At2g17000 2 720 IPR016688 -
Seca3g01047 721 Gene3D - 543 592 IPR023408 -
Seca3g01047 721 SUPERFAMILY Sm-like ribonucleoproteins 533 592 IPR010920 -
Seca3g01047 721 MobiDBLite consensus disorder prediction 42 79 - -
Seca3g01047 721 Coils Coil 335 355 - -
Seca3g01047 721 MobiDBLite consensus disorder prediction 92 106 - -
Seca3g01047 721 Pfam Mechanosensitive ion channel 484 689 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01047 Seca-Chr3 17844013 17848465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01047 22 720 Mechanosensitive Ion Channel Family AT1G78610 48.865 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01047 K22048 - cave:132190409 852.818