Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01012 ATGGCATCACCATCACCATCACCACCATGTCCATGTCCATGTAATTGCCGGAGTCATGTAACAAACACACCAACACCCTCTCAATACCCTTCTTCCTCAGTTCCCAAAATCCCATCCAACCGAAAGTCCATTGAACAAGTCTGGAAAGACATAAATCTTGGCTCTCTTTGTAATTGCTCCACCGACACAGAAGCTCCCCCTTCTACCTTTCTCAACGTCTTAAACAATGACTCATCCGCAATCTTTTCTGCTGCTGATTCTTCTTTATTTCAGAAGCAAGCTCCATCAACCAATTCCCTTAGCTTTCAGAAACAGGGTCTGCAGGAGGACTACTCTCTTCTTCTTTCATTGGACACTTCGAAATCTTCTTCTACCAACTTGTGCTCATCCTCTGATCAACGGTTTAAGCGTCTGATGAAAAATCGAGAATCTGCTGCTCGGTCCAGAGCTCGGAAACAGGAAACTCTCTTTCTCCATTTTCTTCATCTTCTCATTAATGGTGAAATTAAAGCTTCTTTTCTTGTTTGTTAA 531 0.4275 MASPSPSPPCPCPCNCRSHVTNTPTPSQYPSSSVPKIPSNRKSIEQVWKDINLGSLCNCSTDTEAPPSTFLNVLNNDSSAIFSAADSSLFQKQAPSTNSLSFQKQGLQEDYSLLLSLDTSKSSSTNLCSSSDQRFKRLMKNRESAARSRARKQETLFLHFLHLLINGEIKASFLVC. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01012 176 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 136 151 IPR004827 GO:0003700|GO:0006355
Seca3g01012 176 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 31 153 IPR043452 GO:0003700|GO:0045893
Seca3g01012 176 Gene3D - 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01012 Seca-Chr3 17083137 17083667 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01012 129 154 bZIP Transcription Factor Family AT2G17770 73.077 7.76e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01012 K14432 - lja:Lj1g3v2216450.1 75.8701