Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00976 ATGGTTCCTCTAGTTTCCATGCTTCATTCTGAAAACTATGAAGTCATAGAAGCTGCTCTTTGTGCTCTTCTCAGCCTTTCCTTTGGCAGTGAACGTGGATTCTACCATAGCAGTAGCACTCAGTCTCAGCTTGATGCTATAGCTACTCTCCACAATCTGTCAACTTGCCAAGAGCTTATTCCATTGATTGTCTCTTTTGGTGTTATATTCTCCTCGCTTGAACTGATCCACAGCTCAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGGGTTGCTAGAAAATATTGTCTCTTCATCAGAGAGTGCACTTTGTGAGGCTGCTAGTACTGGGAGAGCAATTCGGCTCCTGGTTGAGACTATTGAAGATGGATCTTTACTAGGCAAAGAGCATGCAGTGGGTATACTTCTCCTTATATGCCAGAGCTGCAGAGAAAAATACAAAGGGTTGATTTTGACAGAGGGAGTGATGCCAGGGTTGTTTCAGTTAAGTGTGGATGGAACATGGAGAGCCAAATCCATGGCTTGA 528 0.4337 MVPLVSMLHSENYEVIEAALCALLSLSFGSERGFYHSSSTQSQLDAIATLHNLSTCQELIPLIVSFGVIFSSLELIHSSVKSSPLVEKAIGLLENIVSSSESALCEAASTGRAIRLLVETIEDGSLLGKEHAVGILLLICQSCREKYKGLILTEGVMPGLFQLSVDGTWRAKSMA. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00976 175 Gene3D - 1 175 IPR011989 -
Seca3g00976 175 SUPERFAMILY ARM repeat 3 170 IPR016024 -
Seca3g00976 175 PANTHER U BOX DOMAIN-CONTAINING 3 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00976 Seca-Chr3 16376612 16377446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00976 40 172 U-box Gene Family AT1G67530 36.842 1.83e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00976 - - gmx:100778534 226.098